RLG00000024819

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0004555
Physical Location & Seq
Reverse (-)
39371810 .. 39372585
776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024819

Sequence Viewer

Length: 510 bp
ATGGCTACAATGCCAAACATCCCGGGTTCCGATCCCCTAGTGTTGAGAAAACCTCCTCTCCATGTCCGGCGGCGTTCCCTAACGGCGGCGTCGTCGGACAGTTCCTTTTCGACTCAGTCTGGGTATGATGTGAGGCTTGGGACATCGGAGAGTCGGCGATTAGTACTGCCTGGTGGCGAGGAGATCGTGCCGGCGCGGCTTGGATCCGATCAATTTGATTTGGTTTGGACTGGGTCGCATGAGTCCGATCTGGGAAAGGGATCGGATGGAAAGGTTGTCGCTGCTCCATGGTTAAATGGTCGACGGCTCGATGGGAATGGCGGTGGGATGAAGACGGCGGTCCCGCGAAGGTGGCTGTGCGGCGCAGCGAGTGGTTCGTCCGCGGTGGTGGGGTTGGGCCGGGTTGAATGGTTTGTTGAGTGGGTTGAGATCAGAGGTCGAAATGGGCCTATACGTGGTGGTAGTTGGGCCTGGGCGTTTGCCAAGGCCTTGGGAATTAATTTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.09

Weight (kDa)

10.23

Isoelectric Point (pI)

51.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AccII CGCG 3 cut(s) 196, 346, 383
AciI CCGC 9 cut(s) 70, 86, 196, 321, 338, 344, 360, 381, 383
AclWI GGATC 4 cut(s) 26, 198, 211, 268
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 85, 455
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 2 cut(s) 169, 470
AlwI GGATC 4 cut(s) 26, 198, 211, 268
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 4 cut(s) 397, 446, 468, 486
ApeKI GCWGC 2 cut(s) 281, 365
AseI ATTAAT 1 cut(s) 498
AspLEI GCGC 2 cut(s) 196, 365
AspS9I GGNCC 4 cut(s) 340, 397, 446, 468
AsuC2I CCSGG 3 cut(s) 23, 24, 401
AvaI CYCGRG 1 cut(s) 22
AvaII GGWCC 1 cut(s) 340
BamHI GGATCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 268, 377
BccI CCATC 2 cut(s) 260, 305
BceAI ACGGC 3 cut(s) 99, 320, 351
BciT130I CCWGG 2 cut(s) 171, 472
BcnI CCSGG 3 cut(s) 23, 24, 401
BfaI CTAG 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 196
BisI GCNGC 6 cut(s) 71, 87, 197, 282, 361, 366
BlsI GCNGC 6 cut(s) 72, 88, 198, 283, 362, 367
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 5 cut(s) 23, 24, 171, 401, 472
Bme18I GGWCC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 4 cut(s) 340, 397, 446, 468
BmiI GGNNCC 3 cut(s) 28, 205, 342
BmrFI CCNGG 5 cut(s) 23, 24, 171, 401, 472
BmrI ACTGGG 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 240
BoxI GACNNNNGTC 1 cut(s) 338
BpiI GAAGAC 1 cut(s) 338
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpuMI CCSGG 3 cut(s) 23, 24, 401
BsaAI YACGTR 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 6 cut(s) 22, 287, 381, 471, 483, 489
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 455
Bse118I RCCGGY 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 171, 472
BseDI CCNNGG 6 cut(s) 22, 287, 381, 471, 483, 489
BseGI GGATG 3 cut(s) 18, 271, 333
BseLI CCNNNNNNNGG 2 cut(s) 85, 455
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 2 cut(s) 45, 194
BseXI GCAGC 2 cut(s) 268, 377
Bsh1236I CGCG 3 cut(s) 196, 346, 383
BshFI GGCC 4 cut(s) 399, 448, 470, 488
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 4 cut(s) 23, 67, 191, 400
BslFI GGGAC 2 cut(s) 154, 326
BslI CCNNNNNNNGG 2 cut(s) 85, 455
BsmFI GGGAC 2 cut(s) 154, 326
BsnI GGCC 4 cut(s) 399, 448, 470, 488
BsoBI CYCGRG 1 cut(s) 22
Bsp143I GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 9 cut(s) 70, 86, 196, 321, 338, 344, 360, 381, 383
BspANI GGCC 4 cut(s) 399, 448, 470, 488
BspCNI CTCAG 1 cut(s) 127
BspFNI CGCG 3 cut(s) 196, 346, 383
BspLI GGNNCC 3 cut(s) 28, 205, 342
BspPI GGATC 4 cut(s) 26, 198, 211, 268
BsrFI RCCGGY 1 cut(s) 190
BsrI ACTGG 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 190
BssECI CCNNGG 6 cut(s) 22, 287, 381, 471, 483, 489
BssMI GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 3 cut(s) 287, 483, 489
Bst2UI CCWGG 2 cut(s) 171, 472
Bst4CI ACNGT 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 2 cut(s) 287, 381
BstF5I GGATG 3 cut(s) 18, 271, 333
BstFNI CGCG 3 cut(s) 196, 346, 383
BstHHI GCGC 2 cut(s) 196, 365
BstKTI GATC 7 cut(s) 34, 186, 206, 211, 250, 263, 432
BstMBI GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
BstMWI GCNNNNNNNGC 2 cut(s) 196, 352
BstNI CCWGG 2 cut(s) 171, 472
BstPAI GACNNNNGTC 1 cut(s) 338
BstSCI CCNGG 5 cut(s) 21, 22, 169, 399, 470
BstUI CGCG 3 cut(s) 196, 346, 383
BstV1I GCAGC 2 cut(s) 268, 377
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 490
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 4 cut(s) 399, 448, 470, 488
BtgI CCRYGG 2 cut(s) 287, 381
BtsCI GGATG 3 cut(s) 18, 271, 333
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 2 cut(s) 196, 365
Cfr10I RCCGGY 1 cut(s) 190
Cfr13I GGNCC 4 cut(s) 340, 397, 446, 468
Cfr42I CCGCGG 1 cut(s) 384
Cfr9I CCCGGG 1 cut(s) 22
CseI GACGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 164
CviAII CATG 3 cut(s) 62, 239, 288
CviJI RGCY 9 cut(s) 5, 136, 199, 307, 355, 399, 448, 470, 488
CviKI_1 RGCY 9 cut(s) 5, 136, 199, 307, 355, 399, 448, 470, 488
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 114
DpnI GATC 7 cut(s) 33, 185, 205, 210, 249, 262, 431
DpnII GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
Eco130I CCWWGG 3 cut(s) 287, 483, 489
Eco147I AGGCCT 1 cut(s) 488
Eco47I GGWCC 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 169, 470
EcoT14I CCWWGG 3 cut(s) 287, 483, 489
ErhI CCWWGG 3 cut(s) 287, 483, 489
FaeI CATG 3 cut(s) 65, 242, 291
FaiI YATR 5 cut(s) 63, 126, 240, 289, 452
FaqI GGGAC 2 cut(s) 154, 326
FatI CATG 3 cut(s) 61, 238, 287
FauI CCCGC 1 cut(s) 351
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 6 cut(s) 71, 87, 197, 282, 361, 366
FokI GGATG 3 cut(s) 5, 278, 340
Fsp4HI GCNGC 6 cut(s) 71, 87, 197, 282, 361, 366
FspBI CTAG 1 cut(s) 38
GlaI GCGC 2 cut(s) 195, 364
GluI GCNGC 6 cut(s) 71, 87, 197, 282, 361, 366
HaeIII GGCC 4 cut(s) 399, 448, 470, 488
HapII CCGG 4 cut(s) 23, 67, 191, 400
HgaI GACGC 1 cut(s) 78
HhaI GCGC 2 cut(s) 196, 365
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 3 cut(s) 65, 242, 291
Hin6I GCGC 2 cut(s) 194, 363
HinP1I GCGC 2 cut(s) 194, 363
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 3 cut(s) 112, 151, 242
HpaII CCGG 4 cut(s) 23, 67, 191, 400
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 7 cut(s) 31, 97, 148, 208, 247, 265, 434
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 3 cut(s) 94, 97, 306
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 352
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 454
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 3 cut(s) 65, 242, 291
HspAI GCGC 2 cut(s) 194, 363
KroI GCCGGC 1 cut(s) 190
KroNI GCCGGC 1 cut(s) 192
KspI CCGCGG 1 cut(s) 384
Kzo9I GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 268, 377
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 454
MalI GATC 7 cut(s) 33, 185, 205, 210, 249, 262, 431
MboI GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
MboII GAAGA 1 cut(s) 343
MflI RGATCY 1 cut(s) 203
MluCI AATT 3 cut(s) 212, 495, 499
MlyI GAGTC 3 cut(s) 106, 160, 251
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 63, 66, 126, 172, 428
MroNI GCCGGC 1 cut(s) 190
MseI TTAA 2 cut(s) 293, 498
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 4 cut(s) 23, 67, 191, 400
MspR9I CCNGG 5 cut(s) 23, 24, 171, 401, 472
MvaI CCWGG 2 cut(s) 171, 472
MvnI CGCG 3 cut(s) 196, 346, 383
MwoI GCNNNNNNNGC 2 cut(s) 196, 352
NaeI GCCGGC 1 cut(s) 192
NciI CCSGG 3 cut(s) 23, 24, 401
NcoI CCATGG 1 cut(s) 287
NdeII GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
NgoMIV GCCGGC 1 cut(s) 190
NlaIII CATG 3 cut(s) 65, 242, 291
NlaIV GGNNCC 3 cut(s) 28, 205, 342
PceI AGGCCT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 192
PflFI GACNNNGTC 2 cut(s) 115, 232
PkrI GCNGC 6 cut(s) 72, 88, 198, 283, 362, 367
PleI GAGTC 3 cut(s) 106, 159, 250
PpsI GAGTC 3 cut(s) 106, 159, 250
Ppu21I YACGTR 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 169, 470
PspGI CCWGG 2 cut(s) 169, 470
PspN4I GGNNCC 3 cut(s) 28, 205, 342
PspPI GGNCC 4 cut(s) 340, 397, 446, 468
PsuI RGATCY 1 cut(s) 203
PsyI GACNNNGTC 2 cut(s) 115, 232
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SacII CCGCGG 1 cut(s) 384
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 293, 498
SatI GCNGC 6 cut(s) 71, 87, 197, 282, 361, 366
Sau3AI GATC 7 cut(s) 31, 183, 203, 208, 247, 260, 429
Sau96I GGNCC 4 cut(s) 340, 397, 446, 468
ScaI AGTACT 1 cut(s) 165
SchI GAGTC 3 cut(s) 106, 160, 251
ScrFI CCNGG 5 cut(s) 23, 24, 171, 401, 472
SetI ASST 5 cut(s) 55, 276, 353, 439, 457
Sfr303I CCGCGG 1 cut(s) 384
SgrBI CCGCGG 1 cut(s) 384
SinI GGWCC 1 cut(s) 340
SmaI CCCGGG 1 cut(s) 24
Sse9I AATT 3 cut(s) 212, 495, 499
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 9 cut(s) 70, 86, 196, 321, 338, 344, 360, 381, 383
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 5 cut(s) 21, 22, 169, 399, 470
StyI CCWWGG 3 cut(s) 287, 483, 489
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 457
TaqI TCGA 4 cut(s) 110, 301, 309, 439
TasI AATT 3 cut(s) 212, 495, 499
TatI WGTACW 1 cut(s) 163
TauI GCSGC 4 cut(s) 73, 89, 199, 363
Tru1I TTAA 2 cut(s) 293, 498
Tru9I TTAA 2 cut(s) 293, 498
TseI GCWGC 2 cut(s) 281, 365
TspDTI ATGAA 1 cut(s) 344
TspMI CCCGGG 1 cut(s) 22
Tth111I GACNNNGTC 2 cut(s) 115, 232
VpaK11BI GGWCC 1 cut(s) 340
VspI ATTAAT 1 cut(s) 498
XmaI CCCGGG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 1 cut(s) 38
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.