Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

23835884 .. 23836177

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG261200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAACCTCGACAACCCTCTCAACGTCACCGTCTGCGCGGAGCACGCCTACTCTGCCACCATCGCCAGATTCTCCCCCAACGGCGAGTGGATTGCGTCTGCCGACGTCTCAGGCACCGTCAGGATCTGGGGGACCCACAACGATTTCGTCCTCAAGAACGAGATGAAGGTCCTCTCGGGTCGGATCGATGACCTCCAGTGGTCCGCCTACGGAATGAGGATCGTCGCCTGCAGCGAAGGCAAAGGGAGACCTTGCGGCTGCGCGGTGATGGAGGTGATGGAAGCTTTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

97

Amino Acids

10.7

Weight (kDa)

5.19

Isoelectric Point (pI)

11.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	13 - 79	2e-09	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	15 - 77	3e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	2 cut(s)	38, 263
AciI	CCGC	4 cut(s)	38, 204, 255, 263
AclWI	GGATC	3 cut(s)	131, 191, 227
AcyI	GRCGYC	1 cut(s)	105
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	112, 241
AlwI	GGATC	3 cut(s)	131, 191, 227
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	231, 258
AspLEI	GCGC	2 cut(s)	38, 263
AspS9I	GGNCC	3 cut(s)	132, 169, 201
AsuHPI	GGTGA	3 cut(s)	19, 277, 286
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	3 cut(s)	132, 169, 201
BanI	GGYRCC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	243, 245
BccI	CCATC	3 cut(s)	68, 262, 271
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BcoDI	GTCTC	2 cut(s)	112, 241
BfmI	CTRYAG	1 cut(s)	229
BisI	GCNGC	3 cut(s)	232, 256, 259
BlsI	GCNGC	3 cut(s)	233, 257, 260
Bme18I	GGWCC	3 cut(s)	132, 169, 201
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	132, 169, 201
BmiI	GGNNCC	3 cut(s)	115, 133, 134
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	186
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	196
BseCI	ATCGAT	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	243, 245
Bsh1236I	CGCG	2 cut(s)	38, 263
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	112, 241
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	123, 183, 219
BspACI	CCGC	4 cut(s)	38, 204, 255, 263
BspCNI	CTCAG	1 cut(s)	122
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	38, 263
BspLI	GGNNCC	3 cut(s)	115, 133, 134
BspMAI	CTGCAG	1 cut(s)	233
BspPI	GGATC	3 cut(s)	131, 191, 227
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	3 cut(s)	123, 183, 219
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	31, 118
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	45, 229
BstDEI	CTNAG	1 cut(s)	109
BstFNI	CGCG	2 cut(s)	38, 263
BstHHI	GCGC	2 cut(s)	38, 263
BstKTI	GATC	3 cut(s)	126, 186, 222
BstMAI	GTCTC	2 cut(s)	112, 241
BstMBI	GATC	3 cut(s)	123, 183, 219
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 62, 237
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	38, 263
BstV1I	GCAGC	2 cut(s)	243, 245
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	45, 229
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	2 cut(s)	38, 263
Cfr13I	GGNCC	3 cut(s)	132, 169, 201
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	84
CviJI	RGCY	2 cut(s)	258, 284
CviKI_1	RGCY	2 cut(s)	258, 284
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	3 cut(s)	125, 185, 221
DpnII	GATC	3 cut(s)	123, 183, 219
EciI	GGCGGA	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	3 cut(s)	132, 169, 201
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	2 cut(s)	132, 169
Esp3I	CGTCTC	1 cut(s)	112
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	232, 256, 259
Fsp4HI	GCNGC	3 cut(s)	232, 256, 259
GlaI	GCGC	2 cut(s)	37, 262
GluI	GCNGC	3 cut(s)	232, 256, 259
GsuI	CTGGAG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	2 cut(s)	38, 263
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	2 cut(s)	36, 261
HinP1I	GCGC	2 cut(s)	36, 261
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	1 cut(s)	69
HphI	GGTGA	3 cut(s)	19, 277, 286
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	121, 154
Hpy99I	CGWCG	2 cut(s)	107, 227
HpyAV	CCTTC	2 cut(s)	160, 230
HpyCH4III	ACNGT	2 cut(s)	31, 118
HpyCH4IV	ACGT	2 cut(s)	24, 105
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 62, 237
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	2 cut(s)	24, 105
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	2 cut(s)	36, 261
KflI	GGGWCCC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	123, 183, 219
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	79, 96, 106, 112, 209, 241, 274
Lsp1109I	GCAGC	2 cut(s)	243, 245
MaeII	ACGT	2 cut(s)	24, 105
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	125, 185, 221
MboI	GATC	3 cut(s)	123, 183, 219
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	7 cut(s)	17, 27, 161, 182, 203, 210, 265
MvnI	CGCG	2 cut(s)	38, 263
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 62, 237
NdeII	GATC	3 cut(s)	123, 183, 219
NlaIV	GGNNCC	3 cut(s)	115, 133, 134
NmuCI	GTSAC	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	233, 257, 260
PpuMI	RGGWCCY	2 cut(s)	132, 169
Psp5II	RGGWCCY	2 cut(s)	132, 169
PspN4I	GGNNCC	3 cut(s)	115, 133, 134
PspPI	GGNCC	3 cut(s)	132, 169, 201
PspPPI	RGGWCCY	2 cut(s)	132, 169
PstI	CTGCAG	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	123
SatI	GCNGC	3 cut(s)	232, 256, 259
Sau3AI	GATC	3 cut(s)	123, 183, 219
Sau96I	GGNCC	3 cut(s)	132, 169, 201
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	9, 27, 108, 171, 195, 253, 276, 286
SfcI	CTRYAG	1 cut(s)	229
SinI	GGWCC	3 cut(s)	132, 169, 201
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	4 cut(s)	38, 204, 255, 263
TaaI	ACNGT	2 cut(s)	31, 118
TaiI	ACGT	2 cut(s)	27, 108
TaqI	TCGA	2 cut(s)	9, 186
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	69
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	231, 258
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	2 cut(s)	17, 179
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	3 cut(s)	132, 169, 201
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.