Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

6011916 .. 6012254

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG074900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCCCAACTCGCCGAGGCCTACGCCTGCGTGCCGTCAACGGAGCGCGGCCAAGGGATCCTGATCTCCGACGACCCCAAATCCAACAGGCTCCTCTACACCAATGGTAGATCCATGATCATCATGAACCTCGACAACCCTCTCGACATCACCGTCTACGCGGAGCACGCCTACCCGGCCACCATCGCCAGATTCTCCCCCAACTGCGAGTGGATTGCGTCCGCCGACATCTCCTGCACCGTCAGGATCTGGGGGACCCACAACGATTTCGTCCTCAAGAATGAGTTAAGGTCCTCTCGGGTGGGATCGACGACCTCCAATGATCCGCTGATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

112

Amino Acids

12.45

Weight (kDa)

5.04

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	2 cut(s)	48, 161
AciI	CCGC	4 cut(s)	48, 161, 222, 326
AclWI	GGATC	6 cut(s)	52, 65, 105, 254, 313, 317
AcoI	YGGCCR	2 cut(s)	49, 177
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	6 cut(s)	52, 65, 105, 254, 313, 317
AlwNI	CAGNNNCTG	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	3 cut(s)	18, 49, 177
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	255, 291
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	255, 291
BamHI	GGATCC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	2 cut(s)	191, 325
BceAI	ACGGC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	255, 291
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	255, 291
BmiI	GGNNCC	4 cut(s)	59, 92, 256, 257
BmrFI	CCNGG	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	15, 52
Bse8I	GATNNNNATC	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	15, 52
BseJI	GATNNNNATC	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	2 cut(s)	48, 161
BshFI	GGCC	3 cut(s)	20, 51, 179
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	20, 51, 179
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
BspACI	CCGC	4 cut(s)	48, 161, 222, 326
BspANI	GGCC	3 cut(s)	20, 51, 179
BspFNI	CGCG	2 cut(s)	48, 161
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	59, 92, 256, 257
BspPI	GGATC	6 cut(s)	52, 65, 105, 254, 313, 317
BssECI	CCNNGG	2 cut(s)	15, 52
BssMI	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
BssT1I	CCWWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	154, 241
BstC8I	GCNNGC	3 cut(s)	28, 32, 168
BstFNI	CGCG	2 cut(s)	48, 161
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	7 cut(s)	60, 66, 113, 120, 249, 308, 325
BstMBI	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 176, 185
BstSCI	CCNGG	1 cut(s)	174
BstUI	CGCG	2 cut(s)	48, 161
BstX2I	RGATCY	3 cut(s)	57, 110, 246
BstYI	RGATCY	3 cut(s)	57, 110, 246
BsuRI	GGCC	3 cut(s)	20, 51, 179
BtgZI	GCGATG	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	28, 32, 168
CaiI	CAGNNNCTG	1 cut(s)	249
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	255, 291
CseI	GACGC	1 cut(s)	207
CviAII	CATG	2 cut(s)	115, 124
CviJI	RGCY	4 cut(s)	20, 51, 91, 179
CviKI_1	RGCY	4 cut(s)	20, 51, 91, 179
DpnI	GATC	7 cut(s)	59, 65, 112, 119, 248, 307, 324
DpnII	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	2 cut(s)	49, 177
EciI	GGCGGA	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	255, 291
Eco88I	CYCGRG	1 cut(s)	297
EcoO109I	RGGNCCY	2 cut(s)	255, 291
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	2 cut(s)	118, 127
FaiI	YATR	2 cut(s)	116, 125
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	114, 123
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	20, 51, 179
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	118, 127
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	2 cut(s)	39, 157
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	5 cut(s)	61, 124, 143, 244, 277
Hpy8I	GTNNAC	2 cut(s)	39, 157
Hpy99I	CGWCG	2 cut(s)	74, 313
HpyCH4III	ACNGT	2 cut(s)	154, 241
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 176, 185
Hsp92II	CATG	2 cut(s)	118, 127
HspAI	GCGC	1 cut(s)	46
KflI	GGGWCCC	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
LmnI	GCTCC	3 cut(s)	43, 96, 163
LpnPI	CCDG	8 cut(s)	40, 73, 74, 189, 202, 229, 235, 247
MalI	GATC	7 cut(s)	59, 65, 112, 119, 248, 307, 324
MboI	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
MflI	RGATCY	3 cut(s)	57, 110, 246
MhlI	GDGCHC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	93, 108
MnlI	CCTC	7 cut(s)	10, 104, 140, 150, 284, 304, 325
MseI	TTAA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	176
MvnI	CGCG	2 cut(s)	48, 161
MwoI	GCNNNNNNNGC	3 cut(s)	167, 176, 185
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
NlaIII	CATG	2 cut(s)	118, 127
NlaIV	GGNNCC	4 cut(s)	59, 92, 256, 257
NmeAIII	GCCGAG	1 cut(s)	40
PagI	TCATGA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	50
PpuMI	RGGWCCY	2 cut(s)	255, 291
Psp5II	RGGWCCY	2 cut(s)	255, 291
PspN4I	GGNNCC	4 cut(s)	59, 92, 256, 257
PspPI	GGNCC	2 cut(s)	255, 291
PspPPI	RGGWCCY	2 cut(s)	255, 291
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	3 cut(s)	57, 110, 246
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	49
Sau3AI	GATC	7 cut(s)	57, 63, 110, 117, 246, 305, 322
Sau96I	GGNCC	2 cut(s)	255, 291
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	3 cut(s)	132, 293, 317
SinI	GGWCC	2 cut(s)	255, 291
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SseBI	AGGCCT	1 cut(s)	20
SsiI	CCGC	4 cut(s)	48, 161, 222, 326
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	154, 241
TaqI	TCGA	3 cut(s)	132, 144, 308
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	255, 291
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.