Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

19010718 .. 19015554

Gene Structure 4837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTGAGTGGTGACTCCAAACTTATCAACTGCACAAATTTGATGATTCTGATGATCGGAATAAGTTGCATAATGGCGGGGGAATACATCGGAGACTGGATAAATCGGTGGAGAGCAACCAGAGAAGAAGAAGAAGAAGAATTCGAAGCCGAGCTTAGCCTCCGTAGATTCTTCTACATTGCCGACGACTCGTTGACTCCGACGACGGTGGTTGAGCTCTCCATCGACGATTTCATCCCCTCCGAGTCAAGTTGCAGTTACCGGCGATTGCTCTGGCCCAAAACCACAGAGCCGCTTCACCAGACGAAGACACCAGCGCCGAGATCCGTGATCATCATGAACCTCGACAACCCTCTCAACATCGCCGTCTGCGTGGAGCACGCCTACCCTGCCACCGTCGCCAGATTCTCCCCCAAAGGCGAGTGGATCGCATCCGCGGACGTCTCCGACACCGTCAGGATCTGGGGGACCCACAACGATTTCGTCCTCAAGAACGAGTTCAAGTTCGTCTCGGGTCTGATCGACAACCTCCAGTGGTCCACCGACGGAATGAGGATCATCGCTTGCGGCGAAGGCAAACGGAGACCTTGCGGCTGCGCGGTGATGGAGGCGGTGGATGCTTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

210

Amino Acids

23.6

Weight (kDa)

4.89

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	126 - 191	9.2e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccII	CGCG	2 cut(s)	437, 599
AciI	CCGC	8 cut(s)	77, 293, 435, 437, 567, 591, 599, 611
AclWI	GGATC	4 cut(s)	318, 434, 467, 563
AcsI	RAATTY	2 cut(s)	37, 140
AcyI	GRCGYC	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	502, 625
AluBI	AGCT	2 cut(s)	154, 217
AluI	AGCT	2 cut(s)	154, 217
Alw21I	GWGCWC	2 cut(s)	219, 381
Alw26I	GTCTC	4 cut(s)	87, 448, 514, 577
AlwI	GGATC	4 cut(s)	318, 434, 467, 563
AlwNI	CAGNNNCTG	1 cut(s)	462
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	1 cut(s)	594
ApoI	RAATTY	2 cut(s)	37, 140
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	319, 599
AspS9I	GGNCC	3 cut(s)	276, 468, 537
AsuHPI	GGTGA	3 cut(s)	23, 290, 613
AsuII	TTCGAA	1 cut(s)	144
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	468, 537
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	219, 381
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	230, 598
BceAI	ACGGC	1 cut(s)	350
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	4 cut(s)	87, 448, 514, 577
BfoI	RGCGCY	1 cut(s)	320
BisI	GCNGC	4 cut(s)	293, 568, 592, 595
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	4 cut(s)	294, 569, 593, 596
Bme18I	GGWCC	2 cut(s)	468, 537
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	3 cut(s)	276, 468, 537
BmiI	GGNNCC	2 cut(s)	469, 470
BmsI	GCATC	2 cut(s)	440, 607
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	435
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	101, 532
Bse3DI	GCAATG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	3 cut(s)	234, 431, 622
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	101, 532
BseXI	GCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	16
Bsh1236I	CGCG	2 cut(s)	437, 599
BshFI	GGCC	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	219, 381
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	4 cut(s)	87, 448, 514, 577
BsmBI	CGTCTC	2 cut(s)	448, 514
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	577
BsoBI	CYCGRG	1 cut(s)	511
Bsp119I	TTCGAA	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	219, 381
Bsp143I	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	8 cut(s)	77, 293, 435, 437, 567, 591, 599, 611
BspANI	GGCC	1 cut(s)	277
BspFNI	CGCG	2 cut(s)	437, 599
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	469, 470
BspPI	GGATC	4 cut(s)	318, 434, 467, 563
BspT104I	TTCGAA	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	101, 532
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
BssNI	GRCGYC	1 cut(s)	441
Bst4CI	ACNGT	3 cut(s)	208, 397, 454
BstACI	GRCGYC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	144
BstC8I	GCNNGC	2 cut(s)	381, 565
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	234, 431, 622
BstFNI	CGCG	2 cut(s)	437, 599
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	2 cut(s)	319, 599
BstKTI	GATC	7 cut(s)	57, 326, 333, 429, 462, 522, 558
BstMAI	GTCTC	4 cut(s)	87, 448, 514, 577
BstMBI	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	389, 398, 573, 617
BstUI	CGCG	2 cut(s)	437, 599
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	323, 459
BstYI	RGATCY	2 cut(s)	323, 459
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	435
BtgZI	GCGATG	2 cut(s)	346, 544
BtsCI	GGATG	3 cut(s)	234, 431, 622
BtsIMutI	CAGTG	1 cut(s)	539
Cac8I	GCNNGC	2 cut(s)	381, 565
CaiI	CAGNNNCTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	319, 599
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	276, 468, 537
Cfr42I	CCGCGG	1 cut(s)	438
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	7 cut(s)	149, 154, 159, 217, 277, 292, 594
CviKI_1	RGCY	7 cut(s)	149, 154, 159, 217, 277, 292, 594
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	7 cut(s)	56, 325, 332, 428, 461, 521, 557
DpnII	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	468, 537
Eco53kI	GAGCTC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	219
Esp3I	CGTCTC	2 cut(s)	448, 514
FaeI	CATG	1 cut(s)	340
FaiI	YATR	2 cut(s)	71, 338
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	336
FauI	CCCGC	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	293, 568, 592, 595
FokI	GGATG	2 cut(s)	221, 418
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	4 cut(s)	293, 568, 592, 595
GlaI	GCGC	2 cut(s)	318, 598
GluI	GCNGC	4 cut(s)	293, 568, 592, 595
GsuI	CTGGAG	1 cut(s)	515
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	262
HhaI	GCGC	2 cut(s)	319, 599
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	2 cut(s)	317, 597
HinP1I	GCGC	2 cut(s)	317, 597
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	7 cut(s)	14, 46, 168, 188, 196, 245, 405
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	3 cut(s)	23, 290, 613
Hpy166II	GTNNAC	2 cut(s)	195, 540
Hpy188I	TCNGA	7 cut(s)	51, 59, 92, 201, 244, 448, 519
Hpy188III	TCNNGA	3 cut(s)	337, 457, 490
Hpy8I	GTNNAC	2 cut(s)	195, 540
Hpy99I	CGWCG	6 cut(s)	188, 205, 208, 230, 401, 548
HpyAV	CCTTC	1 cut(s)	566
HpyCH4III	ACNGT	3 cut(s)	208, 397, 454
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	3 cut(s)	33, 69, 255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	389, 398, 573, 617
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	2 cut(s)	317, 597
KflI	GGGWCCC	1 cut(s)	468
Ksp22I	TGATCA	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	438
Kzo9I	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	2 cut(s)	440, 607
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	11, 257
MalI	GATC	7 cut(s)	56, 325, 332, 428, 461, 521, 557
MboI	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
MboII	GAAGA	7 cut(s)	137, 140, 143, 146, 149, 163, 319
MflI	RGATCY	2 cut(s)	323, 459
MhlI	GDGCHC	2 cut(s)	219, 381
MluCI	AATT	2 cut(s)	37, 140
MlyI	GAGTC	4 cut(s)	8, 182, 190, 254
MmeI	TCCRAC	2 cut(s)	224, 471
MnlI	CCTC	8 cut(s)	170, 250, 353, 363, 497, 539, 546, 601
MroXI	GAANNNNTTC	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	262
MvnI	CGCG	2 cut(s)	437, 599
MwoI	GCNNNNNNNGC	4 cut(s)	389, 398, 573, 617
NdeII	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	2 cut(s)	469, 470
NmeAIII	GCCGAG	2 cut(s)	175, 345
NmuCI	GTSAC	1 cut(s)	11
NspV	TTCGAA	1 cut(s)	144
PagI	TCATGA	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	3 cut(s)	197, 369, 567
PdmI	GAANNNNTTC	1 cut(s)	497
PfeI	GAWTC	3 cut(s)	46, 168, 405
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	4 cut(s)	294, 569, 593, 596
PleI	GAGTC	4 cut(s)	8, 182, 190, 253
PpsI	GAGTC	4 cut(s)	8, 182, 190, 253
PpuMI	RGGWCCY	1 cut(s)	468
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	468
PspN4I	GGNNCC	2 cut(s)	469, 470
PspPI	GGNCC	3 cut(s)	276, 468, 537
PspPPI	RGGWCCY	1 cut(s)	468
PstNI	CAGNNNCTG	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	323, 459
PsyI	GACNNNGTC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	219
SacII	CCGCGG	1 cut(s)	438
SatI	GCNGC	4 cut(s)	293, 568, 592, 595
Sau3AI	GATC	7 cut(s)	54, 323, 330, 426, 459, 519, 555
Sau96I	GGNCC	3 cut(s)	276, 468, 537
SchI	GAGTC	4 cut(s)	8, 182, 190, 254
SduI	GDGCHC	2 cut(s)	219, 381
SetI	ASST	6 cut(s)	156, 219, 345, 444, 531, 589
SfaNI	GCATC	2 cut(s)	440, 607
Sfr303I	CCGCGG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	144
SgrBI	CCGCGG	1 cut(s)	438
SinI	GGWCC	2 cut(s)	468, 537
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	37, 140
SsiI	CCGC	8 cut(s)	77, 293, 435, 437, 567, 591, 599, 611
SstI	GAGCTC	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	208, 397, 454
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	4 cut(s)	144, 225, 345, 522
TasI	AATT	2 cut(s)	37, 140
TauI	GCSGC	3 cut(s)	295, 570, 594
TfiI	GAWTC	3 cut(s)	46, 168, 405
TscAI	CASTG	1 cut(s)	539
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	594
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	223, 353
TspGWI	ACGGA	4 cut(s)	152, 316, 561, 595
TspRI	CASTG	1 cut(s)	539
Tth111I	GACNNNGTC	1 cut(s)	452
VpaK11BI	GGWCC	2 cut(s)	468, 537
XapI	RAATTY	2 cut(s)	37, 140
XmnI	GAANNNNTTC	1 cut(s)	497
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.