Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7975970.1

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 412

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7975970.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ggatgtgatggaaaggttgtcgctgcttcatggttaaatggtcgacggcgcgatgggaatggcggtgggatgaaggcggcggtcctgcgaaggtggctgtgctgccgggggatcctgatatccggcgaccccaaatccaacaggctcctctacaccaatggcagatccgtgatcatcatgaacctcgacaacccactcgacgtcgccgtctacgcagagcacgcctacccggccaccgtcgccagattctccccaacggcgagtggatcgcgtccgccgacgtctccggcaccgtcaggatctgggggacgcacaacgatttcgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

109

Amino Acids

11.42

Weight (kDa)

10.06

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	2 cut(s)	204, 284
AccB1I	GGYRCC	1 cut(s)	289
AccI	GTMKAC	2 cut(s)	43, 210
AccII	CGCG	2 cut(s)	51, 271
AciI	CCGC	4 cut(s)	63, 77, 80, 275
AclWI	GGATC	5 cut(s)	106, 119, 159, 274, 307
AcoI	YGGCCR	1 cut(s)	231
AcyI	GRCGYC	2 cut(s)	201, 281
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	5 cut(s)	106, 119, 159, 274, 307
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	23, 102
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	2 cut(s)	107, 230
AvaII	GGWCC	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	111
BanI	GGYRCC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	10, 89
BccI	CCATC	2 cut(s)	2, 47
BceAI	ACGGC	3 cut(s)	62, 191, 273
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	107, 230
BcoDI	GTCTC	1 cut(s)	288
BglI	GCCNNNNNGGC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	24, 78, 103
BlsI	GCNGC	3 cut(s)	25, 79, 104
Bme1390I	CCNGG	2 cut(s)	107, 230
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	113, 146, 291
BmrFI	CCNGG	2 cut(s)	107, 230
BpuMI	CCSGG	2 cut(s)	107, 230
BsaHI	GRCGYC	2 cut(s)	201, 281
BsaJI	CCNNGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	8, 75
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	10, 89
Bsh1236I	CGCG	2 cut(s)	51, 271
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	106, 123, 230, 287
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	5 cut(s)	111, 164, 171, 266, 299
BspACI	CCGC	4 cut(s)	63, 77, 80, 275
BspANI	GGCC	1 cut(s)	233
BspFNI	CGCG	2 cut(s)	51, 271
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	3 cut(s)	113, 146, 291
BspPI	GGATC	5 cut(s)	106, 119, 159, 274, 307
BspT107I	GGYRCC	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	5 cut(s)	111, 164, 171, 266, 299
BssNI	GRCGYC	2 cut(s)	201, 281
Bst4CI	ACNGT	2 cut(s)	238, 294
BstACI	GRCGYC	2 cut(s)	201, 281
BstC8I	GCNNGC	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	8, 75
BstFNI	CGCG	2 cut(s)	51, 271
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	5 cut(s)	114, 167, 174, 269, 302
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	5 cut(s)	111, 164, 171, 266, 299
BstMWI	GCNNNNNNNGC	5 cut(s)	94, 212, 221, 230, 239
BstSCI	CCNGG	2 cut(s)	105, 228
BstUI	CGCG	2 cut(s)	51, 271
BstV1I	GCAGC	2 cut(s)	10, 89
BstX2I	RGATCY	3 cut(s)	111, 164, 299
BstYI	RGATCY	3 cut(s)	111, 164, 299
BsuRI	GGCC	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	8, 75
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	2 cut(s)	260, 318
CviAII	CATG	2 cut(s)	30, 178
CviJI	RGCY	3 cut(s)	97, 145, 233
CviKI_1	RGCY	3 cut(s)	97, 145, 233
DpnI	GATC	5 cut(s)	113, 166, 173, 268, 301
DpnII	GATC	5 cut(s)	111, 164, 171, 266, 299
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	2 cut(s)	33, 181
FaiI	YATR	2 cut(s)	31, 179
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	29, 177
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	2 cut(s)	43, 210
Fnu4HI	GCNGC	3 cut(s)	24, 78, 103
FokI	GGATG	2 cut(s)	15, 82
Fsp4HI	GCNGC	3 cut(s)	24, 78, 103
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	3 cut(s)	24, 78, 103
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	4 cut(s)	106, 123, 230, 287
HgaI	GACGC	2 cut(s)	260, 318
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	2 cut(s)	201, 281
Hin1II	CATG	2 cut(s)	33, 181
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	4 cut(s)	106, 123, 230, 287
Hpy166II	GTNNAC	2 cut(s)	44, 211
Hpy188III	TCNNGA	3 cut(s)	115, 178, 297
Hpy8I	GTNNAC	2 cut(s)	44, 211
Hpy99I	CGWCG	5 cut(s)	48, 203, 206, 242, 283
HpyAV	CCTTC	2 cut(s)	67, 84
HpyCH4III	ACNGT	2 cut(s)	238, 294
HpyCH4IV	ACGT	2 cut(s)	201, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	94, 212, 221, 230, 239
HpySE526I	ACGT	2 cut(s)	201, 281
Hsp92I	GRCGYC	2 cut(s)	201, 281
Hsp92II	CATG	2 cut(s)	33, 181
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	5 cut(s)	111, 164, 171, 266, 299
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	2 cut(s)	10, 89
MaeII	ACGT	2 cut(s)	201, 281
MalI	GATC	5 cut(s)	113, 166, 173, 268, 301
MboI	GATC	5 cut(s)	111, 164, 171, 266, 299
MflI	RGATCY	3 cut(s)	111, 164, 299
MhlI	GDGCHC	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	2 cut(s)	158, 194
MseI	TTAA	1 cut(s)	35
MspI	CCGG	4 cut(s)	106, 123, 230, 287
MspR9I	CCNGG	2 cut(s)	107, 230
MvnI	CGCG	2 cut(s)	51, 271
MwoI	GCNNNNNNNGC	5 cut(s)	94, 212, 221, 230, 239
NciI	CCSGG	2 cut(s)	107, 230
NdeII	GATC	5 cut(s)	111, 164, 171, 266, 299
NlaIII	CATG	2 cut(s)	33, 181
NlaIV	GGNNCC	3 cut(s)	113, 146, 291
PagI	TCATGA	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 275
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	25, 79, 104
PspN4I	GGNNCC	3 cut(s)	113, 146, 291
PspPI	GGNCC	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	111, 164, 299
SalI	GTCGAC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	3 cut(s)	24, 78, 103
Sau3AI	GATC	5 cut(s)	111, 164, 171, 266, 299
Sau96I	GGNCC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	107, 230
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	18, 95, 186, 204, 284
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	4 cut(s)	63, 77, 80, 275
StyD4I	CCNGG	2 cut(s)	105, 228
TaaI	ACNGT	2 cut(s)	238, 294
TaiI	ACGT	2 cut(s)	204, 284
TaqI	TCGA	3 cut(s)	43, 186, 198
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	2 cut(s)	23, 102
TspDTI	ATGAA	3 cut(s)	18, 86, 194
TspGWI	ACGGA	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	82
XmiI	GTMKAC	2 cut(s)	43, 210
ZraI	GACGTC	2 cut(s)	202, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.