Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

64842313 .. 64861142

Gene Structure 18830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG481800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTACAGCTGTGATGCTTTACCTATGCCCGAAATCTCGATCATACAGGTTCTGCGAAGGCCAGTGATTTCTCTGCTTATGGACAAGGATAGTGGGCAATATAAGGGTGTTAGATTGGTTTCAGGTCAGGATTTGTTCAGTCATCCCTTCACGGTGCCACTGCCATCAGCTTCATCTCCACCAGTCCTTCCAAAAGAAAGTCTGAAAGTTGGCGCATCTGATTTGGAACACTTGGTGCTTAACTGCCGGTCATTGAAGTCTATTCTGGTGCACCATAAAACGCTAAAGCAGATATTGCCTCTGATGCGAAAGCGGACTAGAAGATTTGTGAAAAGTGGGTTACTGGAGAATATGGTGGAGGTTTCAGATTTAGCTTGGATCACCGACATTGGGGGTGTGGCGCTCTCGGCTATTTCAACCCTCAAGAACTTGAGCTTGGAAGAGCTGTCCAGAATGTCGGACCGCACCATTGTTGCTCTTGCTAAGAATTGCCCCGACTTGGAGAATGAACGGAGACTGCCTGGTGGGGACGAGATCGTGCCGGCGCGGCTTGGATCCGATCAATTTGATCTGGTTTGGACTGGGTCGCATGAGTCCGATCTGGGAAAGGGATGGGATGGAAAGGTTGTCGCTGCTCCATGGTTAAATGGTCGACGGCTCGATGGGAATGGTGGTGGGATGAAGGCGGCGGTCCCGCGAAGGTGGCTGTGCAGCGCAGCGAGTGGTTCGTCGGAGGTGGTGGGGTTGGGCCAGGTTGAATGGGAACTGGCAGAAAAGAAGATGGGTATTCCTAATCCAGTACTGATCAAGCAGTTCCAATTGACAATGGAGGAAGTTGATGAGCTGCTGAAGAACACATTTGAGGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005968 GO:0008150 GO:0009889 GO:0009893 GO:0010556 GO:0010604 GO:0017016 GO:0017137 GO:0019222 GO:0019899 GO:0031267 GO:0031323 GO:0031325 GO:0031326 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051020 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:1902494 GO:1990234 GO:2000112 GO:2000539 GO:2000541

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GDI

Protein Analysis

290

Amino Acids

31.85

Weight (kDa)

6.97

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	652
AccII	CGCG	2 cut(s)	547, 697
AciI	CCGC	6 cut(s)	313, 463, 547, 686, 689, 695
AclWI	GGATC	3 cut(s)	386, 549, 562
AcuI	CTGAAG	1 cut(s)	869
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	2 cut(s)	5, 801
AfiI	CCNNNNNNNGG	2 cut(s)	390, 499
AgsI	TTSAA	3 cut(s)	256, 417, 758
AjnI	CCWGG	2 cut(s)	520, 750
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	6 cut(s)	9, 170, 374, 435, 445, 844
AluI	AGCT	6 cut(s)	9, 170, 374, 435, 445, 844
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	508
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	386, 549, 562
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	59, 748
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	4 cut(s)	632, 711, 716, 844
AspLEI	GCGC	4 cut(s)	215, 403, 547, 716
AspS9I	GGNCC	3 cut(s)	460, 691, 748
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	2 cut(s)	460, 691
BaeGI	GKGCMC	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	4 cut(s)	619, 723, 728, 831
BccI	CCATC	5 cut(s)	172, 606, 611, 656, 775
BceAI	ACGGC	1 cut(s)	671
BciT130I	CCWGG	2 cut(s)	522, 752
BclI	TGATCA	1 cut(s)	804
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	547
BisI	GCNGC	6 cut(s)	548, 633, 687, 712, 717, 845
BlsI	GCNGC	6 cut(s)	549, 634, 688, 713, 718, 846
BmcAI	AGTACT	1 cut(s)	801
Bme1390I	CCNGG	2 cut(s)	522, 752
Bme18I	GGWCC	2 cut(s)	460, 691
BmgT120I	GGNCC	3 cut(s)	460, 691, 748
BmiI	GGNNCC	3 cut(s)	156, 556, 693
BmrFI	CCNGG	2 cut(s)	522, 752
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	3 cut(s)	4, 224, 294
BmuI	ACTGGG	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	407, 451
BsaJI	CCNNGG	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 499
Bse118I	RCCGGY	2 cut(s)	246, 541
Bse1I	ACTGG	6 cut(s)	62, 182, 348, 586, 771, 797
BseBI	CCWGG	2 cut(s)	522, 752
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	4 cut(s)	142, 617, 622, 684
BseLI	CCNNNNNNNGG	2 cut(s)	390, 499
BseNI	ACTGG	6 cut(s)	62, 182, 348, 586, 771, 797
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	4 cut(s)	619, 723, 728, 831
BsgI	GTGCAG	1 cut(s)	730
Bsh1236I	CGCG	2 cut(s)	547, 697
BshFI	GGCC	2 cut(s)	61, 750
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	247, 542
BslFI	GGGAC	2 cut(s)	542, 677
BslI	CCNNNNNNNGG	2 cut(s)	390, 499
BsmAI	GTCTC	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	542, 677
BsnI	GGCC	2 cut(s)	61, 750
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	6 cut(s)	313, 463, 547, 686, 689, 695
BspANI	GGCC	2 cut(s)	61, 750
BspFNI	CGCG	2 cut(s)	547, 697
BspLI	GGNNCC	3 cut(s)	156, 556, 693
BspPI	GGATC	3 cut(s)	386, 549, 562
BspQI	GCTCTTC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	154
BsrFI	RCCGGY	2 cut(s)	246, 541
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	6 cut(s)	62, 182, 348, 586, 771, 797
BssAI	RCCGGY	2 cut(s)	246, 541
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
BssT1I	CCWWGG	1 cut(s)	638
Bst2UI	CCWGG	2 cut(s)	522, 752
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	4 cut(s)	142, 617, 622, 684
BstFNI	CGCG	2 cut(s)	547, 697
BstH2I	RGCGCY	1 cut(s)	404
BstHHI	GCGC	4 cut(s)	215, 403, 547, 716
BstKTI	GATC	8 cut(s)	42, 381, 537, 557, 562, 571, 601, 807
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
BstMWI	GCNNNNNNNGC	5 cut(s)	295, 304, 407, 547, 703
BstNI	CCWGG	2 cut(s)	522, 752
BstSCI	CCNGG	2 cut(s)	520, 750
BstSLI	GKGCMC	1 cut(s)	273
BstUI	CGCG	2 cut(s)	547, 697
BstV1I	GCAGC	4 cut(s)	619, 723, 728, 831
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	61, 750
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	4 cut(s)	142, 617, 622, 684
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	69, 158
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	4 cut(s)	215, 403, 547, 716
Cfr10I	RCCGGY	2 cut(s)	246, 541
Cfr13I	GGNCC	3 cut(s)	460, 691, 748
CpoI	CGGWCCG	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	4, 800
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CspI	CGGWCCG	1 cut(s)	460
CviAII	CATG	2 cut(s)	590, 639
CviQI	GTAC	2 cut(s)	4, 800
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	8 cut(s)	41, 380, 536, 556, 561, 570, 600, 806
DpnII	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
DraIII	CACNNNGTG	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	638
Eco47I	GGWCC	2 cut(s)	460, 691
Eco57I	CTGAAG	1 cut(s)	869
EcoRII	CCWGG	2 cut(s)	520, 750
EcoT14I	CCWWGG	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	638
FaeI	CATG	2 cut(s)	593, 642
FaiI	YATR	8 cut(s)	26, 44, 80, 102, 276, 353, 591, 640
FaqI	GGGAC	2 cut(s)	542, 677
FatI	CATG	2 cut(s)	589, 638
FauI	CCCGC	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	804
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	6 cut(s)	548, 633, 687, 712, 717, 845
FokI	GGATG	4 cut(s)	129, 624, 629, 691
Fsp4HI	GCNGC	6 cut(s)	548, 633, 687, 712, 717, 845
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	4 cut(s)	214, 402, 546, 715
GluI	GCNGC	6 cut(s)	548, 633, 687, 712, 717, 845
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	404
HaeIII	GGCC	2 cut(s)	61, 750
HapII	CCGG	2 cut(s)	247, 542
HhaI	GCGC	4 cut(s)	215, 403, 547, 716
Hin1II	CATG	2 cut(s)	593, 642
Hin6I	GCGC	4 cut(s)	213, 401, 545, 714
HinP1I	GCGC	4 cut(s)	213, 401, 545, 714
HincII	GTYRAC	1 cut(s)	653
HindII	GTYRAC	1 cut(s)	653
HinfI	GANTC	1 cut(s)	593
HpaII	CCGG	2 cut(s)	247, 542
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	271, 653
Hpy188I	TCNGA	8 cut(s)	204, 220, 303, 367, 460, 559, 598, 733
Hpy188III	TCNNGA	4 cut(s)	37, 128, 424, 450
Hpy8I	GTNNAC	2 cut(s)	271, 653
Hpy99I	CGWCG	2 cut(s)	657, 733
HpyAV	CCTTC	5 cut(s)	51, 157, 197, 676, 693
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	271, 711
HpyF10VI	GCNNNNNNNGC	5 cut(s)	295, 304, 407, 547, 703
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	593, 642
HspAI	GCGC	4 cut(s)	213, 401, 545, 714
KroI	GCCGGC	1 cut(s)	541
KroNI	GCCGGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	804
Kzo9I	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	640
Lsp1109I	GCAGC	4 cut(s)	619, 723, 728, 831
LweI	GCATC	3 cut(s)	4, 224, 294
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	8 cut(s)	41, 380, 536, 556, 561, 570, 600, 806
MboI	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
MboII	GAAGA	4 cut(s)	333, 452, 790, 862
MfeI	CAATTG	1 cut(s)	818
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	3 cut(s)	487, 563, 818
MlyI	GAGTC	1 cut(s)	602
MmeI	TCCRAC	2 cut(s)	438, 711
MnlI	CCTC	6 cut(s)	309, 352, 431, 727, 823, 856
MroNI	GCCGGC	1 cut(s)	541
MseI	TTAA	2 cut(s)	240, 644
MspA1I	CMGCKG	1 cut(s)	9
MspI	CCGG	2 cut(s)	247, 542
MspR9I	CCNGG	2 cut(s)	522, 752
MunI	CAATTG	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	522, 752
MvnI	CGCG	2 cut(s)	547, 697
MwoI	GCNNNNNNNGC	5 cut(s)	295, 304, 407, 547, 703
NaeI	GCCGGC	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
NgoMIV	GCCGGC	1 cut(s)	541
NlaIII	CATG	2 cut(s)	593, 642
NlaIV	GGNNCC	3 cut(s)	156, 556, 693
NmeAIII	GCCGAG	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	583
PkrI	GCNGC	6 cut(s)	549, 634, 688, 713, 718, 846
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Psp6I	CCWGG	2 cut(s)	520, 750
PspGI	CCWGG	2 cut(s)	520, 750
PspN4I	GGNNCC	3 cut(s)	156, 556, 693
PspPI	GGNCC	3 cut(s)	460, 691, 748
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	554
PsyI	GACNNNGTC	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	2 cut(s)	5, 801
RsaNI	GTAC	2 cut(s)	4, 800
Rsr2I	CGGWCCG	1 cut(s)	460
RsrII	CGGWCCG	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	651
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	240, 644
SatI	GCNGC	6 cut(s)	548, 633, 687, 712, 717, 845
Sau3AI	GATC	8 cut(s)	39, 378, 534, 554, 559, 568, 598, 804
Sau96I	GGNCC	3 cut(s)	460, 691, 748
ScaI	AGTACT	1 cut(s)	801
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	2 cut(s)	522, 752
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	4, 224, 294
SinI	GGWCC	2 cut(s)	460, 691
SmlI	CTYRAG	2 cut(s)	422, 430
SmoI	CTYRAG	2 cut(s)	422, 430
Sse9I	AATT	3 cut(s)	487, 563, 818
SsiI	CCGC	6 cut(s)	313, 463, 547, 686, 689, 695
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	520, 750
StyI	CCWWGG	1 cut(s)	638
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	38, 652, 660
TasI	AATT	3 cut(s)	487, 563, 818
TatI	WGTACW	2 cut(s)	3, 799
TauI	GCSGC	2 cut(s)	550, 689
Tru1I	TTAA	2 cut(s)	240, 644
Tru9I	TTAA	2 cut(s)	240, 644
TscAI	CASTG	2 cut(s)	69, 165
TseI	GCWGC	4 cut(s)	632, 711, 716, 844
TspDTI	ATGAA	3 cut(s)	162, 522, 695
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	2 cut(s)	69, 165
Tth111I	GACNNNGTC	1 cut(s)	583
VneI	GTGCAC	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	460, 691
XmiI	GTMKAC	1 cut(s)	652
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.