RchiOBHm_Chr7g0194371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004555
Physical Location & Seq
Reverse (-)
12456657 .. 12457715
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17380

Sequence Viewer

Length: 237 bp
ATGGCGGTGGCGGTGTGGGAGTTGAGGGAGGAGGAGATTCCGTCTGCCTTTGGTTCTTTCCTCGCTGGGCTGATTGGCGAATTGGTTGGGTGTCGCATGAACGGAGACTGCCTGGTGGGGACGAGATTGTGCCGGCGCGGCTTTGATCCGATCAATTTGCCTTCGGTTTGGGCTGGGTCGCATGAGTCCGATCTGGGGAAGGGTGGGATGGAAAGGTTGTCGCTGCTCCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.39

Weight (kDa)

5.19

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 138
AciI CCGC 3 cut(s) 5, 11, 138
AclWI GGATC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 195
AjnI CCWGG 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 1 cut(s) 140
ApeKI GCWGC 1 cut(s) 223
AspLEI GCGC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 2 cut(s) 139, 224
BlsI GCNGC 2 cut(s) 140, 225
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 132
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 195
BseRI GAGGAG 2 cut(s) 44, 47
BseXI GCAGC 1 cut(s) 210
BseYI CCCAGC 2 cut(s) 65, 173
Bsh1236I CGCG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 145, 150, 190
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 3 cut(s) 5, 11, 138
BspFNI CGCG 1 cut(s) 138
BspPI GGATC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 3 cut(s) 145, 150, 190
BssT1I CCWWGG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 134
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 3 cut(s) 148, 153, 193
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 145, 150, 190
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 1 cut(s) 132
CviAII CATG 3 cut(s) 97, 182, 230
CviJI RGCY 3 cut(s) 70, 141, 173
CviKI_1 RGCY 3 cut(s) 70, 141, 173
DpnI GATC 3 cut(s) 147, 152, 192
DpnII GATC 3 cut(s) 145, 150, 190
Eco130I CCWWGG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 100, 185, 233
FaiI YATR 3 cut(s) 98, 183, 231
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 96, 181, 229
Fnu4HI GCNGC 2 cut(s) 139, 224
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 2 cut(s) 139, 224
GlaI GCGC 1 cut(s) 137
GluI GCNGC 2 cut(s) 139, 224
GsaI CCCAGC 2 cut(s) 69, 177
HapII CCGG 1 cut(s) 133
HhaI GCGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 100, 185, 233
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 2 cut(s) 37, 185
HpaII CCGG 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 150, 190
HpyAV CCTTC 2 cut(s) 171, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 100, 185, 233
HspAI GCGC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 132
KroNI GCCGGC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 145, 150, 190
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 6 cut(s) 51, 98, 125, 146, 159, 179
Lsp1109I GCAGC 1 cut(s) 210
MalI GATC 3 cut(s) 147, 152, 192
MboI GATC 3 cut(s) 145, 150, 190
MluCI AATT 2 cut(s) 80, 154
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 4 cut(s) 18, 22, 25, 71
MroNI GCCGGC 1 cut(s) 132
MseI TTAA 1 cut(s) 235
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 138
NaeI GCCGGC 1 cut(s) 134
NcoI CCATGG 1 cut(s) 229
NdeII GATC 3 cut(s) 145, 150, 190
NgoMIV GCCGGC 1 cut(s) 132
NlaIII CATG 3 cut(s) 100, 185, 233
PdiI GCCGGC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 2 cut(s) 140, 225
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 111
PspFI CCCAGC 2 cut(s) 65, 173
PspGI CCWGG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 2 cut(s) 139, 224
Sau3AI GATC 3 cut(s) 145, 150, 190
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 113
SetI ASST 1 cut(s) 218
Sse9I AATT 2 cut(s) 80, 154
SsiI CCGC 3 cut(s) 5, 11, 138
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 229
TasI AATT 2 cut(s) 80, 154
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 2 cut(s) 30, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.