Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

25083369 .. 25085329

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002073

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAACCTCGACAACCCTCTCAACGTCGCCGTCTGCACGGAGCACGCCTACCCTGCCACCGTCGCCAGATTCTCCCCCAAAGGCGAGTGGATCGCTTCCGCCGATGTCTCCGGCACCGTCAGGATCTGGGGGACCCACAACGATTTCATCCTCAAGAACGAGTTCAAGTTCGTCTCGGGTGGGATCGATAACCTCCAGTGGTCCGCCGACGGAATGAGGATCATTGCTTGCGGCGAAGGCAAAGGGAGACCTTGCGGCTGCTCGGTGATGGAGGTGGTGGATGCTTTCAGTGACCATCAAGATGAAGATTTGCACAAGATCATTGAAGACAACACCGCAGAACTAAAGGACTACTACAATGAAGAAATAATAATGCCCTATAACTATGAGGCTCTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

134

Amino Acids

14.82

Weight (kDa)

4.5

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	13 - 78	5.9e-09	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AciI	CCGC	5 cut(s)	99, 204, 231, 255, 336
AclWI	GGATC	4 cut(s)	98, 131, 191, 227
AgsI	TTSAA	2 cut(s)	166, 326
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	112, 178, 241
AlwI	GGATC	4 cut(s)	98, 131, 191, 227
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	132, 201
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	132, 201
BanI	GGYRCC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	2 cut(s)	262, 303
BceAI	ACGGC	1 cut(s)	14
BcoDI	GTCTC	3 cut(s)	112, 178, 241
BisI	GCNGC	3 cut(s)	232, 256, 259
BlsI	GCNGC	3 cut(s)	233, 257, 260
Bme18I	GGWCC	2 cut(s)	132, 201
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	132, 201
BmiI	GGNNCC	3 cut(s)	115, 133, 134
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	222
BseCI	ATCGAT	1 cut(s)	186
BseGI	GGATG	2 cut(s)	147, 286
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	3 cut(s)	112, 178, 241
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	5 cut(s)	90, 123, 183, 219, 318
BspACI	CCGC	5 cut(s)	99, 204, 231, 255, 336
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	115, 133, 134
BspPI	GGATC	4 cut(s)	98, 131, 191, 227
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	90, 123, 183, 219, 318
Bst4CI	ACNGT	2 cut(s)	61, 118
BstC8I	GCNNGC	2 cut(s)	45, 229
BstF5I	GGATG	2 cut(s)	147, 286
BstKTI	GATC	5 cut(s)	93, 126, 186, 222, 321
BstMAI	GTCTC	3 cut(s)	112, 178, 241
BstMBI	GATC	5 cut(s)	90, 123, 183, 219, 318
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 62, 237
BstV1I	GCAGC	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	186
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	147, 286
BtsIMutI	CAGTG	2 cut(s)	203, 295
Cac8I	GCNNGC	2 cut(s)	45, 229
CaiI	CAGNNNCTG	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	132, 201
ClaI	ATCGAT	1 cut(s)	186
CviJI	RGCY	2 cut(s)	258, 392
CviKI_1	RGCY	2 cut(s)	258, 392
DpnI	GATC	5 cut(s)	92, 125, 185, 221, 320
DpnII	GATC	5 cut(s)	90, 123, 183, 219, 318
EciI	GGCGGA	2 cut(s)	88, 193
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	132, 201
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	132
Esp3I	CGTCTC	1 cut(s)	178
FaiI	YATR	3 cut(s)	381, 387, 400
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	232, 256, 259
FokI	GGATG	2 cut(s)	134, 293
Fsp4HI	GCNGC	3 cut(s)	232, 256, 259
GluI	GCNGC	3 cut(s)	232, 256, 259
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	1 cut(s)	111
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	121, 154, 299
Hpy99I	CGWCG	3 cut(s)	29, 65, 212
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	61, 118
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	36, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 62, 237
HpySE526I	ACGT	1 cut(s)	24
KflI	GGGWCCC	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	90, 123, 183, 219, 318
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	6 cut(s)	66, 79, 106, 112, 124, 209
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	92, 125, 185, 221, 320
MboI	GATC	5 cut(s)	90, 123, 183, 219, 318
MboII	GAAGA	3 cut(s)	317, 338, 374
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	45
MnlI	CCTC	7 cut(s)	17, 27, 161, 203, 210, 265, 382
MroXI	GAANNNNTTC	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	53, 62, 237
NdeII	GATC	5 cut(s)	90, 123, 183, 219, 318
NlaIV	GGNNCC	3 cut(s)	115, 133, 134
NmuCI	GTSAC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	233, 257, 260
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	3 cut(s)	115, 133, 134
PspPI	GGNCC	2 cut(s)	132, 201
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	300
SatI	GCNGC	3 cut(s)	232, 256, 259
Sau3AI	GATC	5 cut(s)	90, 123, 183, 219, 318
Sau96I	GGNCC	2 cut(s)	132, 201
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	9, 27, 195, 253, 276
SfaNI	GCATC	1 cut(s)	271
SinI	GGWCC	2 cut(s)	132, 201
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	5 cut(s)	99, 204, 231, 255, 336
TaaI	ACNGT	2 cut(s)	61, 118
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	9, 186
TauI	GCSGC	2 cut(s)	234, 258
TfiI	GAWTC	1 cut(s)	69
TscAI	CASTG	2 cut(s)	203, 295
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	4 cut(s)	17, 136, 318, 375
TspGWI	ACGGA	2 cut(s)	53, 225
TspRI	CASTG	2 cut(s)	203, 295
VpaK11BI	GGWCC	2 cut(s)	132, 201
XmnI	GAANNNNTTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.