Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

11238858 .. 11239618

Gene Structure 761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGTGCCGGCGCGGCTTGGATCCGATCAATTTGATCTGGTTTGGACTGGGTCGCATGAGTCCGATCTGGGAAAGGGATGGGATGGAAAGGTTGTCGCTGCTCCATGGTTAAATGGTCGACGGCTCGATGGGAATGGCGGTGGGATGAAGGCGGCGGTCCCGCGAAGGTGGCTGTGCGGCGCAGCGAGTGGTTCGTCGGAGGTGGTGGGGTTGGGCCGGGTTGAATGGTTTGTTGAGTGGGTTGAGATCAGAGGTCGAAATGGGCCTATACGTGGTGGTAGTTGGGCCTGGGCGTTGGCCAAGGCCTTGGGTCTTTTTTGTATTTATTTTTTTTTACGTATTTTTATTTTGTATGAATTGTTTTGTGATAATTTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

8.57

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	118
AccII	CGCG	2 cut(s)	13, 163
AciI	CCGC	6 cut(s)	13, 138, 152, 155, 161, 177
AclWI	GGATC	2 cut(s)	15, 28
AcoI	YGGCCR	1 cut(s)	297
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	287
AlwI	GGATC	2 cut(s)	15, 28
AoxI	GGCC	5 cut(s)	214, 263, 285, 297, 303
ApeKI	GCWGC	2 cut(s)	98, 182
AspLEI	GCGC	2 cut(s)	13, 182
AspS9I	GGNCC	4 cut(s)	157, 214, 263, 285
AsuC2I	CCSGG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	299
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	85, 194
BccI	CCATC	3 cut(s)	72, 77, 122
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	13
BisI	GCNGC	5 cut(s)	14, 99, 153, 178, 183
BlsI	GCNGC	5 cut(s)	15, 100, 154, 179, 184
Bme1390I	CCNGG	2 cut(s)	218, 289
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	4 cut(s)	157, 214, 263, 285
BmiI	GGNNCC	3 cut(s)	6, 22, 159
BmrFI	CCNGG	2 cut(s)	218, 289
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	2 cut(s)	272, 338
BsaJI	CCNNGG	4 cut(s)	104, 288, 300, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	4 cut(s)	104, 288, 300, 306
BseGI	GGATG	3 cut(s)	83, 88, 150
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	85, 194
Bsh1236I	CGCG	2 cut(s)	13, 163
BshFI	GGCC	5 cut(s)	216, 265, 287, 299, 305
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	2 cut(s)	8, 217
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	216, 265, 287, 299, 305
Bsp143I	GATC	5 cut(s)	20, 25, 34, 64, 246
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	6 cut(s)	13, 138, 152, 155, 161, 177
BspANI	GGCC	5 cut(s)	216, 265, 287, 299, 305
BspFNI	CGCG	2 cut(s)	13, 163
BspLI	GGNNCC	3 cut(s)	6, 22, 159
BspPI	GGATC	2 cut(s)	15, 28
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	4 cut(s)	104, 288, 300, 306
BssMI	GATC	5 cut(s)	20, 25, 34, 64, 246
BssT1I	CCWWGG	3 cut(s)	104, 300, 306
Bst2UI	CCWGG	1 cut(s)	289
BstBAI	YACGTR	2 cut(s)	272, 338
BstC8I	GCNNGC	1 cut(s)	9
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	83, 88, 150
BstFNI	CGCG	2 cut(s)	13, 163
BstHHI	GCGC	2 cut(s)	13, 182
BstKTI	GATC	5 cut(s)	23, 28, 37, 67, 249
BstMBI	GATC	5 cut(s)	20, 25, 34, 64, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 169
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	216, 287
BstSNI	TACGTA	1 cut(s)	338
BstUI	CGCG	2 cut(s)	13, 163
BstV1I	GCAGC	2 cut(s)	85, 194
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	5 cut(s)	216, 265, 287, 299, 305
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	83, 88, 150
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	2 cut(s)	13, 182
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	157, 214, 263, 285
CviAII	CATG	2 cut(s)	56, 105
CviJI	RGCY	8 cut(s)	16, 124, 172, 216, 265, 287, 299, 305
CviKI_1	RGCY	8 cut(s)	16, 124, 172, 216, 265, 287, 299, 305
DpnI	GATC	5 cut(s)	22, 27, 36, 66, 248
DpnII	GATC	5 cut(s)	20, 25, 34, 64, 246
EaeI	YGGCCR	1 cut(s)	297
Eco105I	TACGTA	1 cut(s)	338
Eco130I	CCWWGG	3 cut(s)	104, 300, 306
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	3 cut(s)	104, 300, 306
ErhI	CCWWGG	3 cut(s)	104, 300, 306
FaeI	CATG	2 cut(s)	59, 108
FaiI	YATR	4 cut(s)	57, 106, 269, 354
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	55, 104
FauI	CCCGC	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	5 cut(s)	14, 99, 153, 178, 183
FokI	GGATG	3 cut(s)	90, 95, 157
Fsp4HI	GCNGC	5 cut(s)	14, 99, 153, 178, 183
GlaI	GCGC	2 cut(s)	12, 181
GluI	GCNGC	5 cut(s)	14, 99, 153, 178, 183
HaeIII	GGCC	5 cut(s)	216, 265, 287, 299, 305
HapII	CCGG	2 cut(s)	8, 217
HhaI	GCGC	2 cut(s)	13, 182
Hin1II	CATG	2 cut(s)	59, 108
Hin6I	GCGC	2 cut(s)	11, 180
HinP1I	GCGC	2 cut(s)	11, 180
HincII	GTYRAC	1 cut(s)	119
HindII	GTYRAC	1 cut(s)	119
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	2 cut(s)	8, 217
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	4 cut(s)	25, 64, 199, 251
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	2 cut(s)	123, 199
HpyAV	CCTTC	2 cut(s)	142, 159
HpyCH4IV	ACGT	2 cut(s)	271, 337
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 169
HpySE526I	ACGT	2 cut(s)	271, 337
Hsp92II	CATG	2 cut(s)	59, 108
HspAI	GCGC	2 cut(s)	11, 180
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	20, 25, 34, 64, 246
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	7 cut(s)	21, 23, 33, 53, 230, 274, 301
Lsp1109I	GCAGC	2 cut(s)	85, 194
MaeII	ACGT	2 cut(s)	271, 337
MalI	GATC	5 cut(s)	22, 27, 36, 66, 248
MboI	GATC	5 cut(s)	20, 25, 34, 64, 246
MflI	RGATCY	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	3 cut(s)	29, 356, 370
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	2 cut(s)	193, 245
Mox20I	TGGCCA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	7
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	2 cut(s)	110, 379
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	2 cut(s)	8, 217
MspR9I	CCNGG	2 cut(s)	218, 289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	2 cut(s)	13, 163
MwoI	GCNNNNNNNGC	2 cut(s)	13, 169
NaeI	GCCGGC	1 cut(s)	9
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	5 cut(s)	20, 25, 34, 64, 246
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	59, 108
NlaIV	GGNNCC	3 cut(s)	6, 22, 159
PceI	AGGCCT	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	9
PflFI	GACNNNGTC	1 cut(s)	49
PkrI	GCNGC	5 cut(s)	15, 100, 154, 179, 184
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
Ppu21I	YACGTR	2 cut(s)	272, 338
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	3 cut(s)	6, 22, 159
PspPI	GGNCC	4 cut(s)	157, 214, 263, 285
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	110, 379
SatI	GCNGC	5 cut(s)	14, 99, 153, 178, 183
Sau3AI	GATC	5 cut(s)	20, 25, 34, 64, 246
Sau96I	GGNCC	4 cut(s)	157, 214, 263, 285
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	218, 289
SetI	ASST	6 cut(s)	93, 170, 204, 256, 274, 340
SinI	GGWCC	1 cut(s)	157
SnaBI	TACGTA	1 cut(s)	338
Sse9I	AATT	3 cut(s)	29, 356, 370
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	6 cut(s)	13, 138, 152, 155, 161, 177
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	216, 287
StyI	CCWWGG	3 cut(s)	104, 300, 306
TaiI	ACGT	2 cut(s)	274, 340
TaqI	TCGA	3 cut(s)	118, 126, 256
TasI	AATT	3 cut(s)	29, 356, 370
TauI	GCSGC	3 cut(s)	16, 155, 180
Tru1I	TTAA	2 cut(s)	110, 379
Tru9I	TTAA	2 cut(s)	110, 379
TseI	GCWGC	2 cut(s)	98, 182
TspDTI	ATGAA	2 cut(s)	161, 369
Tth111I	GACNNNGTC	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.