Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033504.1

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

357 .. 1291

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033504.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgaccaatggtcggccgcggtctccagcgaccggtgaccggaatcctgcaaccgatgaccagaatacggcgaccggtcaccggaatcctgctcctggactggtgaccggattccggcgtctgaagccgcttcaccggatgaagacaccagcgccgagatccgtgatcatcatgaacctcgacaaccctctcaatgtcgccgtctgcgcggagcacgcctaccctgccaccgtcgccagattctcccccaacggccagtggatcgcgtccgccgacgtctccggcaccgtcaagatctgggggacccacaacgatttcttcctcaagaacgagttcaaggtcgtctcgggtcggatcgacgacctccagtggtccggcgacggaatgaggatcgtcgcttgcggggaaggcgcgcaaagggagaccttgcagctgcgtggtgatggaagcggaggatgctttcaggtgagacagagatctgaggcacagagagagagacagggagagatcggagattggggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

174

Amino Acids

19.02

Weight (kDa)

9.29

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	4 cut(s)	19, 209, 266, 413
AciI	CCGC	7 cut(s)	17, 19, 128, 209, 270, 402, 450
AclWI	GGATC	4 cut(s)	153, 269, 362, 398
AcoI	YGGCCR	2 cut(s)	14, 253
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	2 cut(s)	118, 276
AfiI	CCNNNNNNNGG	7 cut(s)	12, 32, 39, 67, 81, 95, 114
AgeI	ACCGGT	2 cut(s)	32, 74
AgsI	TTSAA	1 cut(s)	337
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	6 cut(s)	27, 283, 349, 416, 463, 490
AlwI	GGATC	4 cut(s)	153, 269, 362, 398
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	2 cut(s)	14, 253
ApeKI	GCWGC	2 cut(s)	430, 433
AsiGI	ACCGGT	2 cut(s)	32, 74
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	4 cut(s)	154, 209, 413, 415
AspS9I	GGNCC	2 cut(s)	303, 372
AsuHPI	GGTGA	6 cut(s)	47, 71, 115, 125, 452, 478
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	303, 372
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	420, 442
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	3 cut(s)	84, 185, 268
BciT130I	CCWGG	1 cut(s)	96
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	6 cut(s)	27, 283, 349, 416, 463, 490
BfoI	RGCGCY	1 cut(s)	155
BglII	AGATCT	2 cut(s)	294, 476
BisI	GCNGC	4 cut(s)	17, 128, 431, 434
BlsI	GCNGC	4 cut(s)	18, 129, 432, 435
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	303, 372
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	303, 372
BmiI	GGNNCC	3 cut(s)	286, 304, 305
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	446
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	2 cut(s)	9, 350
BpuEI	CTTGAG	1 cut(s)	308
BsaHI	GRCGYC	2 cut(s)	118, 276
BsaI	GGTCTC	2 cut(s)	27, 416
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	6 cut(s)	32, 39, 74, 81, 107, 135
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 32, 39, 67, 81, 95, 114
Bse118I	RCCGGY	2 cut(s)	32, 74
Bse1I	ACTGG	3 cut(s)	105, 256, 367
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	144, 461
BseLI	CCNNNNNNNGG	7 cut(s)	12, 32, 39, 67, 81, 95, 114
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	3 cut(s)	105, 256, 367
BsePI	GCGCGC	1 cut(s)	411
BseX3I	CGGCCG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	420, 442
Bsh1236I	CGCG	4 cut(s)	19, 209, 266, 413
Bsh1285I	CGRYCG	3 cut(s)	17, 33, 75
BshFI	GGCC	2 cut(s)	16, 255
BshNI	GGYRCC	1 cut(s)	284
BshTI	ACCGGT	2 cut(s)	32, 74
BsiEI	CGRYCG	3 cut(s)	17, 33, 75
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	9 cut(s)	33, 40, 75, 82, 108, 115, 136, 282, 375
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	7 cut(s)	12, 32, 39, 67, 81, 95, 114
BsmAI	GTCTC	6 cut(s)	27, 283, 349, 416, 463, 490
BsmBI	CGTCTC	2 cut(s)	283, 349
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	16, 255
Bso31I	GGTCTC	2 cut(s)	27, 416
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
BspACI	CCGC	7 cut(s)	17, 19, 128, 209, 270, 402, 450
BspANI	GGCC	2 cut(s)	16, 255
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	4 cut(s)	19, 209, 266, 413
BspHI	TCATGA	1 cut(s)	171
BspLI	GGNNCC	3 cut(s)	286, 304, 305
BspPI	GGATC	4 cut(s)	153, 269, 362, 398
BspT107I	GGYRCC	1 cut(s)	284
BspTNI	GGTCTC	2 cut(s)	27, 416
BsrFI	RCCGGY	2 cut(s)	32, 74
BsrI	ACTGG	3 cut(s)	105, 256, 367
BssAI	RCCGGY	2 cut(s)	32, 74
BssECI	CCNNGG	1 cut(s)	17
BssHII	GCGCGC	1 cut(s)	411
BssMI	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
BssNI	GRCGYC	2 cut(s)	118, 276
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	232, 289
BstACI	GRCGYC	2 cut(s)	118, 276
BstC8I	GCNNGC	3 cut(s)	216, 400, 413
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	1 cut(s)	17
BstEII	GGTNACC	3 cut(s)	35, 77, 103
BstF5I	GGATG	2 cut(s)	144, 461
BstFNI	CGCG	4 cut(s)	19, 209, 266, 413
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	4 cut(s)	154, 209, 413, 415
BstKTI	GATC	8 cut(s)	161, 168, 264, 297, 357, 393, 479, 510
BstMAI	GTCTC	6 cut(s)	27, 283, 349, 416, 463, 490
BstMBI	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
BstMCI	CGRYCG	3 cut(s)	17, 33, 75
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 206, 215, 224, 233, 408, 456
BstNI	CCWGG	1 cut(s)	96
BstPI	GGTNACC	3 cut(s)	35, 77, 103
BstSCI	CCNGG	1 cut(s)	94
BstUI	CGCG	4 cut(s)	19, 209, 266, 413
BstV1I	GCAGC	2 cut(s)	420, 442
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	3 cut(s)	158, 294, 476
BstYI	RGATCY	3 cut(s)	158, 294, 476
BstZI	CGGCCG	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	16, 255
BtgI	CCRYGG	1 cut(s)	17
BtsCI	GGATG	2 cut(s)	144, 461
BtsIMutI	CAGTG	2 cut(s)	263, 374
Cac8I	GCNNGC	3 cut(s)	216, 400, 413
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	4 cut(s)	154, 209, 413, 415
Cfr10I	RCCGGY	2 cut(s)	32, 74
Cfr13I	GGNCC	2 cut(s)	303, 372
Cfr42I	CCGCGG	1 cut(s)	20
CseI	GACGC	2 cut(s)	107, 255
CspAI	ACCGGT	2 cut(s)	32, 74
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	16, 127, 255, 433
CviKI_1	RGCY	4 cut(s)	16, 127, 255, 433
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	8 cut(s)	160, 167, 263, 296, 356, 392, 478, 509
DpnII	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
DriI	GACNNNNNGTC	1 cut(s)	9
EaeI	YGGCCR	2 cut(s)	14, 253
EagI	CGGCCG	1 cut(s)	14
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	14
Eco31I	GGTCTC	2 cut(s)	27, 416
Eco47I	GGWCC	2 cut(s)	303, 372
Eco52I	CGGCCG	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	346
Eco91I	GGTNACC	3 cut(s)	35, 77, 103
EcoO109I	RGGNCCY	1 cut(s)	303
EcoO65I	GGTNACC	3 cut(s)	35, 77, 103
EcoRII	CCWGG	1 cut(s)	94
Esp3I	CGTCTC	2 cut(s)	283, 349
FaeI	CATG	1 cut(s)	175
FaiI	YATR	1 cut(s)	173
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	1 cut(s)	171
FauI	CCCGC	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	4 cut(s)	17, 128, 431, 434
FokI	GGATG	2 cut(s)	151, 468
Fsp4HI	GCNGC	4 cut(s)	17, 128, 431, 434
GlaI	GCGC	4 cut(s)	153, 208, 412, 414
GluI	GCNGC	4 cut(s)	17, 128, 431, 434
GsuI	CTGGAG	2 cut(s)	9, 350
HaeII	RGCGCY	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	16, 255
HapII	CCGG	9 cut(s)	33, 40, 75, 82, 108, 115, 136, 282, 375
HgaI	GACGC	2 cut(s)	107, 255
HhaI	GCGC	4 cut(s)	154, 209, 413, 415
Hin1I	GRCGYC	2 cut(s)	118, 276
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	4 cut(s)	152, 207, 411, 413
HinP1I	GCGC	4 cut(s)	152, 207, 411, 413
HinfI	GANTC	4 cut(s)	43, 85, 111, 240
HpaII	CCGG	9 cut(s)	33, 40, 75, 82, 108, 115, 136, 282, 375
HphI	GGTGA	6 cut(s)	47, 71, 115, 125, 452, 478
Hpy188I	TCNGA	4 cut(s)	123, 354, 481, 512
Hpy188III	TCNNGA	3 cut(s)	172, 292, 325
Hpy99I	CGWCG	5 cut(s)	236, 278, 362, 383, 398
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	232, 289
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	50, 430
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 206, 215, 224, 233, 408, 456
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	118, 276
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	4 cut(s)	152, 207, 411, 413
KflI	GGGWCCC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	165
KspI	CCGCGG	1 cut(s)	20
Kzo9I	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
LmnI	GCTCC	2 cut(s)	97, 211
Lsp1109I	GCAGC	2 cut(s)	420, 442
LweI	GCATC	1 cut(s)	446
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	35, 77, 103
MalI	GATC	8 cut(s)	160, 167, 263, 296, 356, 392, 478, 509
MboI	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
MboII	GAAGA	2 cut(s)	154, 310
MflI	RGATCY	3 cut(s)	158, 294, 476
MhlI	GDGCHC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	7 cut(s)	188, 198, 332, 374, 381, 446, 475
MroXI	GAANNNNTTC	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	19, 433
MspI	CCGG	9 cut(s)	33, 40, 75, 82, 108, 115, 136, 282, 375
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	4 cut(s)	19, 209, 266, 413
MwoI	GCNNNNNNNGC	7 cut(s)	124, 206, 215, 224, 233, 408, 456
NdeII	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	3 cut(s)	286, 304, 305
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	3 cut(s)	35, 77, 103
PagI	TCATGA	1 cut(s)	171
PauI	GCGCGC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	4 cut(s)	43, 85, 111, 240
PfoI	TCCNGGA	1 cut(s)	94
PinAI	ACCGGT	2 cut(s)	32, 74
PkrI	GCNGC	4 cut(s)	18, 129, 432, 435
PpuMI	RGGWCCY	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	94
PspEI	GGTNACC	3 cut(s)	35, 77, 103
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	286, 304, 305
PspPI	GGNCC	2 cut(s)	303, 372
PspPPI	RGGWCCY	1 cut(s)	303
PsuI	RGATCY	3 cut(s)	158, 294, 476
PteI	GCGCGC	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	433
SacII	CCGCGG	1 cut(s)	20
SatI	GCNGC	4 cut(s)	17, 128, 431, 434
Sau3AI	GATC	8 cut(s)	158, 165, 261, 294, 354, 390, 476, 507
Sau96I	GGNCC	2 cut(s)	303, 372
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	7 cut(s)	180, 279, 342, 366, 428, 435, 468
SfaNI	GCATC	1 cut(s)	446
Sfr303I	CCGCGG	1 cut(s)	20
SgrBI	CCGCGG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	303, 372
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SsiI	CCGC	7 cut(s)	17, 19, 128, 209, 270, 402, 450
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	232, 289
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	180, 357
TauI	GCSGC	2 cut(s)	19, 130
TfiI	GAWTC	4 cut(s)	43, 85, 111, 240
TscAI	CASTG	2 cut(s)	263, 374
TseFI	GTSAC	3 cut(s)	35, 77, 103
TseI	GCWGC	2 cut(s)	430, 433
Tsp45I	GTSAC	3 cut(s)	35, 77, 103
TspDTI	ATGAA	2 cut(s)	155, 188
TspGWI	ACGGA	2 cut(s)	151, 396
TspRI	CASTG	2 cut(s)	263, 374
VpaK11BI	GGWCC	2 cut(s)	303, 372
XmnI	GAANNNNTTC	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.