Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8393573.1

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

100 .. 518

Gene Structure 419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8393573.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgaccaccacttctcctcttcagtccataaaagctgcgaggtttcaaatccccacaaaatccccaaaatgccccaactcgccgaggcttctctacaccaatggtagatccatgatcatcatgaacctcgacaaccctctcgatgtcgctgtctacgcggagcacccctacccggttaccatcaccagattctcccccaactgcgagtggattgagtccgccgacgtctcaggcacagtcaagatctgggggacccacaacgatttcgtcctcaagaacgagttcaaggtcctctcgggtaggattgactaccttcagtggtccgccagacaaatgaatggagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

9.03

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	158, 219, 324
AclWI	GGATC	1 cut(s)	102
AcuI	CTGAAG	2 cut(s)	5, 299
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	47, 286
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	102
Ama87I	CYCGRG	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	3 cut(s)	252, 289, 321
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	175
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	3 cut(s)	252, 289, 321
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	232
BglII	AGATCT	1 cut(s)	243
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	3 cut(s)	252, 289, 321
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	3 cut(s)	252, 289, 321
BmiI	GGNNCC	2 cut(s)	253, 254
BmrFI	CCNGG	1 cut(s)	173
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	107, 114, 243
BspACI	CCGC	3 cut(s)	158, 219, 324
BspCNI	CTCAG	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	253, 254
BspPI	GGATC	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	3 cut(s)	107, 114, 243
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	229
BstEII	GGTNACC	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	3 cut(s)	110, 117, 246
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	107, 114, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstPI	GGTNACC	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	2 cut(s)	107, 243
BstYI	RGATCY	2 cut(s)	107, 243
BtsIMutI	CAGTG	1 cut(s)	323
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	252, 289, 321
CviAII	CATG	2 cut(s)	112, 121
CviJI	RGCY	2 cut(s)	35, 88
CviKI_1	RGCY	2 cut(s)	35, 88
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	3 cut(s)	109, 116, 245
DpnII	GATC	3 cut(s)	107, 114, 243
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	2 cut(s)	208, 313
Eco47I	GGWCC	3 cut(s)	252, 289, 321
Eco57I	CTGAAG	2 cut(s)	5, 299
Eco88I	CYCGRG	1 cut(s)	295
Eco91I	GGTNACC	1 cut(s)	175
EcoO109I	RGGNCCY	2 cut(s)	252, 289
EcoO65I	GGTNACC	1 cut(s)	175
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	115, 124
FaiI	YATR	3 cut(s)	29, 113, 122
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	111, 120
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	2 cut(s)	115, 124
HinfI	GANTC	2 cut(s)	189, 215
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188III	TCNNGA	4 cut(s)	121, 140, 241, 274
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	2 cut(s)	115, 124
KflI	GGGWCCC	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	107, 114, 243
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	5 cut(s)	186, 199, 216, 232, 340
Lsp1109I	GCAGC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	3 cut(s)	109, 116, 245
MboI	GATC	3 cut(s)	107, 114, 243
MboII	GAAGA	1 cut(s)	11
MflI	RGATCY	2 cut(s)	107, 243
MhlI	GDGCHC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	27, 33, 78, 137, 147, 281, 302
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	346
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	3 cut(s)	107, 114, 243
NlaIII	CATG	2 cut(s)	115, 124
NlaIV	GGNNCC	2 cut(s)	253, 254
NmeAIII	GCCGAG	1 cut(s)	108
PagI	TCATGA	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	189
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PpuMI	RGGWCCY	2 cut(s)	252, 289
Psp5II	RGGWCCY	2 cut(s)	252, 289
PspEI	GGTNACC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	253, 254
PspPI	GGNCC	3 cut(s)	252, 289, 321
PspPPI	RGGWCCY	2 cut(s)	252, 289
PsuI	RGATCY	2 cut(s)	107, 243
SaqAI	TTAA	1 cut(s)	346
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	107, 114, 243
Sau96I	GGNCC	3 cut(s)	252, 289, 321
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	6 cut(s)	37, 44, 129, 228, 291, 315
SinI	GGWCC	3 cut(s)	252, 289, 321
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SsiI	CCGC	3 cut(s)	158, 219, 324
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	129, 141
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	346
Tru9I	TTAA	1 cut(s)	346
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	252, 289, 321
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	281
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.