Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024851.1

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

222 .. 671

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024851.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ctggtgacgtggcagaacggcataggccaaattggtagttgtagagtccgagcgcggccggggatcctgatctctggagaccccaaatccaacaggctcctctacaccaatggcagatcagtgatcatcatgaacctcgacaaccctctcgacgtcgccgtctacgccgagcacgcctacccggccaccgtcgccaaattctcccccaacggcgagtggatcgcgtccgccgacgtctccggcacagtcaggatctgggggacccactatgatttcgtgctcaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

96

Amino Acids

10.51

Weight (kDa)

8.94

Isoelectric Point (pI)

18.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	2 cut(s)	156, 237
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	2 cut(s)	55, 224
AciI	CCGC	2 cut(s)	55, 228
AclWI	GGATC	4 cut(s)	58, 71, 227, 260
AcoI	YGGCCR	2 cut(s)	56, 183
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	153, 234
AjiI	CACGTC	1 cut(s)	9
Alw21I	GWGCWC	2 cut(s)	174, 282
Alw26I	GTCTC	2 cut(s)	72, 241
AlwI	GGATC	4 cut(s)	58, 71, 227, 260
AlwNI	CAGNNNCTG	1 cut(s)	255
AoxI	GGCC	3 cut(s)	25, 56, 183
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	2 cut(s)	60, 182
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	261
BamHI	GGATCC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	174, 282
BceAI	ACGGC	3 cut(s)	34, 143, 226
BclI	TGATCA	1 cut(s)	123
BcnI	CCSGG	2 cut(s)	60, 182
BcoDI	GTCTC	2 cut(s)	72, 241
BfaI	CTAG	1 cut(s)	289
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	60, 182
Bme18I	GGWCC	1 cut(s)	261
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	4 cut(s)	65, 98, 262, 263
BmrFI	CCNGG	2 cut(s)	60, 182
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	60, 182
BsaBI	GATNNNNATC	1 cut(s)	68
BsaHI	GRCGYC	2 cut(s)	153, 234
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	89
BseX3I	CGGCCG	1 cut(s)	56
Bsh1236I	CGCG	2 cut(s)	55, 224
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	3 cut(s)	27, 58, 185
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	2 cut(s)	174, 282
BsiSI	CCGG	3 cut(s)	59, 182, 240
BslFI	GGGAC	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	72, 241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	27, 58, 185
Bso31I	GGTCTC	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	174, 282
Bsp143I	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
BspACI	CCGC	2 cut(s)	55, 228
BspANI	GGCC	3 cut(s)	27, 58, 185
BspFNI	CGCG	2 cut(s)	55, 224
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	4 cut(s)	65, 98, 262, 263
BspPI	GGATC	4 cut(s)	58, 71, 227, 260
BspTNI	GGTCTC	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
BssNI	GRCGYC	2 cut(s)	153, 234
Bst4CI	ACNGT	2 cut(s)	190, 247
BstACI	GRCGYC	2 cut(s)	153, 234
BstC8I	GCNNGC	1 cut(s)	174
BstFNI	CGCG	2 cut(s)	55, 224
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	6 cut(s)	66, 72, 119, 126, 222, 255
BstMAI	GTCTC	2 cut(s)	72, 241
BstMBI	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 173, 182, 191
BstSCI	CCNGG	2 cut(s)	58, 180
BstUI	CGCG	2 cut(s)	55, 224
BstX2I	RGATCY	2 cut(s)	63, 252
BstYI	RGATCY	2 cut(s)	63, 252
BstZI	CGGCCG	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	27, 58, 185
BtrI	CACGTC	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	255
CciI	TCATGA	1 cut(s)	129
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	213
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	4 cut(s)	27, 58, 97, 185
CviKI_1	RGCY	4 cut(s)	27, 58, 97, 185
DpnI	GATC	6 cut(s)	65, 71, 118, 125, 221, 254
DpnII	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	2 cut(s)	56, 183
EagI	CGGCCG	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	56
EcoO109I	RGGNCCY	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	23, 131, 270
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	123
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	289
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	27, 58, 185
HapII	CCGG	3 cut(s)	59, 182, 240
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	2 cut(s)	153, 234
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	3 cut(s)	59, 182, 240
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	6 cut(s)	67, 75, 130, 149, 250, 283
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	4 cut(s)	155, 158, 194, 236
HpyCH4III	ACNGT	2 cut(s)	190, 247
HpyCH4IV	ACGT	3 cut(s)	8, 153, 234
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 173, 182, 191
HpySE526I	ACGT	3 cut(s)	8, 153, 234
Hsp92I	GRCGYC	2 cut(s)	153, 234
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	53
KflI	GGGWCCC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	8 cut(s)	60, 72, 79, 80, 195, 235, 241, 253
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	3 cut(s)	8, 153, 234
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	6 cut(s)	65, 71, 118, 125, 221, 254
MboI	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
MflI	RGATCY	2 cut(s)	63, 252
MhlI	GDGCHC	2 cut(s)	174, 282
MluCI	AATT	2 cut(s)	30, 197
MlyI	GAGTC	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	3 cut(s)	110, 146, 156
MspI	CCGG	3 cut(s)	59, 182, 240
MspR9I	CCNGG	2 cut(s)	60, 182
MvnI	CGCG	2 cut(s)	55, 224
MwoI	GCNNNNNNNGC	4 cut(s)	164, 173, 182, 191
NciI	CCSGG	2 cut(s)	60, 182
NdeII	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	4 cut(s)	65, 98, 262, 263
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	4
PagI	TCATGA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 228
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	65, 98, 262, 263
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
PstNI	CAGNNNCTG	1 cut(s)	255
PsuI	RGATCY	2 cut(s)	63, 252
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	6 cut(s)	63, 69, 116, 123, 219, 252
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	60, 182
SduI	GDGCHC	2 cut(s)	174, 282
SetI	ASST	4 cut(s)	11, 138, 156, 237
SinI	GGWCC	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	30, 197
SsiI	CCGC	2 cut(s)	55, 228
SspMI	CTAG	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	58, 180
TaaI	ACNGT	2 cut(s)	190, 247
TaiI	ACGT	3 cut(s)	11, 156, 237
TaqI	TCGA	2 cut(s)	138, 150
TasI	AATT	2 cut(s)	30, 197
TauI	GCSGC	1 cut(s)	58
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	289
ZraI	GACGTC	2 cut(s)	154, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.