Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

80001403 .. 80002260

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022018

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCTACAATGCCAAACATCCCGGGTTCCACTCCCCTAGTGTTGAGAAAACCTCCTCTCCATGTGCGGCGGCGTTCCCTAACGGCGGCGTCGTCGGACGGTTCCTTTTCGACTCAGTTTGGGTCTGATGGAGGAGGAGATTGGAGAATTGGCTGGGTGTCGAATGAACGGAGACTGCCTGGTGGGGACGAGATCGTGCCGGCGCGGCTTGGATCCGATCAATTTGATCTGGTTTGGACTGGGTCGCATGAGTCCGATCTGGGAAAGGGATGGGATGGAAAGGTTGTCGCTACTCCATGGTTAAATGGTCGACGGCTCGATGGGAATGGCGGTGGGATGAAGGCGGCGGTCCAGCGAAGGTGGCTGTGCGGCGCAGCTAGTAGTTCGTCGGAGGTAGTGGGGTTGGGCCGGGCTGAATGGTTTGTTGAGTGGGTTGAGATTAGAGGTCGAAATGGGCCTATACGTGGTGTCACAAAGCTAGAGCTTATGAGAGATAGTCATGAACAAGGTGCAGATAGATTGGAAACTTGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.32

Weight (kDa)

8.77

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	1 cut(s)	205
AciI	CCGC	8 cut(s)	67, 70, 86, 205, 330, 344, 347, 369
AclWI	GGATC	2 cut(s)	207, 220
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	85, 464
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	3 cut(s)	377, 478, 484
AluI	AGCT	3 cut(s)	377, 478, 484
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	2 cut(s)	207, 220
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	406, 455
ApeKI	GCWGC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	205, 374
AspS9I	GGNCC	3 cut(s)	349, 406, 455
AsuC2I	CCSGG	3 cut(s)	23, 24, 410
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	349
BamHI	GGATCC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	4 cut(s)	122, 264, 269, 314
BceAI	ACGGC	2 cut(s)	99, 329
BciT130I	CCWGG	1 cut(s)	180
BcnI	CCSGG	3 cut(s)	23, 24, 410
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	3 cut(s)	38, 378, 479
BglI	GCCNNNNNGGC	1 cut(s)	205
BisI	GCNGC	7 cut(s)	68, 71, 87, 206, 345, 370, 375
BlsI	GCNGC	7 cut(s)	69, 72, 88, 207, 346, 371, 376
Bme1390I	CCNGG	4 cut(s)	23, 24, 180, 410
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	349, 406, 455
BmiI	GGNNCC	3 cut(s)	28, 103, 214
BmrFI	CCNGG	4 cut(s)	23, 24, 180, 410
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpuMI	CCSGG	3 cut(s)	23, 24, 410
BsaAI	YACGTR	1 cut(s)	464
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	2 cut(s)	22, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 464
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	22, 296
BseGI	GGATG	4 cut(s)	18, 275, 280, 342
BseLI	CCNNNNNNNGG	2 cut(s)	85, 464
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	3 cut(s)	45, 147, 150
BseXI	GCAGC	1 cut(s)	386
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	408, 457
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	23, 200, 409
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	85, 464
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	408, 457
BsoBI	CYCGRG	1 cut(s)	22
Bsp143I	GATC	5 cut(s)	192, 212, 217, 226, 256
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	8 cut(s)	67, 70, 86, 205, 330, 344, 347, 369
BspANI	GGCC	2 cut(s)	408, 457
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	28, 103, 214
BspPI	GGATC	2 cut(s)	207, 220
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	2 cut(s)	22, 296
BssMI	GATC	5 cut(s)	192, 212, 217, 226, 256
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	101
BstACI	GRCGYC	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	4 cut(s)	18, 275, 280, 342
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	205, 374
BstKTI	GATC	5 cut(s)	195, 215, 220, 229, 259
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	5 cut(s)	192, 212, 217, 226, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 361
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	4 cut(s)	21, 22, 178, 408
BstUI	CGCG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	408, 457
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	4 cut(s)	18, 275, 280, 342
Cac8I	GCNNGC	1 cut(s)	201
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	2 cut(s)	205, 374
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	3 cut(s)	349, 406, 455
Cfr9I	CCCGGG	1 cut(s)	22
CseI	GACGC	1 cut(s)	78
CviAII	CATG	4 cut(s)	62, 248, 297, 500
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	5 cut(s)	194, 214, 219, 228, 258
DpnII	GATC	5 cut(s)	192, 212, 217, 226, 256
Eco130I	CCWWGG	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	349
Eco88I	CYCGRG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	4 cut(s)	65, 251, 300, 503
FaiI	YATR	6 cut(s)	63, 249, 298, 461, 488, 501
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	4 cut(s)	61, 247, 296, 499
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	7 cut(s)	68, 71, 87, 206, 345, 370, 375
FokI	GGATG	4 cut(s)	5, 282, 287, 349
Fsp4HI	GCNGC	7 cut(s)	68, 71, 87, 206, 345, 370, 375
FspBI	CTAG	3 cut(s)	38, 378, 479
GlaI	GCGC	2 cut(s)	204, 373
GluI	GCNGC	7 cut(s)	68, 71, 87, 206, 345, 370, 375
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	408, 457
HapII	CCGG	3 cut(s)	23, 200, 409
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	2 cut(s)	205, 374
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	4 cut(s)	65, 251, 300, 503
Hin6I	GCGC	2 cut(s)	203, 372
HinP1I	GCGC	2 cut(s)	203, 372
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HinfI	GANTC	2 cut(s)	112, 251
HpaII	CCGG	3 cut(s)	23, 200, 409
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	5 cut(s)	97, 127, 217, 256, 391
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	4 cut(s)	94, 97, 315, 391
HpyAV	CCTTC	2 cut(s)	334, 351
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 361
HpyF3I	CTNAG	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	463
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	4 cut(s)	65, 251, 300, 503
HspAI	GCGC	2 cut(s)	203, 372
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	5 cut(s)	192, 212, 217, 226, 256
Lsp1109I	GCAGC	1 cut(s)	386
MaeI	CTAG	3 cut(s)	38, 378, 479
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	5 cut(s)	194, 214, 219, 228, 258
MboI	GATC	5 cut(s)	192, 212, 217, 226, 256
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	2 cut(s)	147, 221
MlyI	GAGTC	2 cut(s)	106, 260
MmeI	TCCRAC	2 cut(s)	75, 369
MnlI	CCTC	6 cut(s)	63, 66, 125, 128, 385, 437
MroNI	GCCGGC	1 cut(s)	199
MseI	TTAA	2 cut(s)	302, 535
MspI	CCGG	3 cut(s)	23, 200, 409
MspR9I	CCNGG	4 cut(s)	23, 24, 180, 410
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	205, 361
NaeI	GCCGGC	1 cut(s)	201
NciI	CCSGG	3 cut(s)	23, 24, 410
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	5 cut(s)	192, 212, 217, 226, 256
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	4 cut(s)	65, 251, 300, 503
NlaIV	GGNNCC	3 cut(s)	28, 103, 214
NmuCI	GTSAC	1 cut(s)	469
PagI	TCATGA	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	241
PkrI	GCNGC	7 cut(s)	69, 72, 88, 207, 346, 371, 376
PleI	GAGTC	2 cut(s)	106, 259
PpsI	GAGTC	2 cut(s)	106, 259
Ppu21I	YACGTR	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	3 cut(s)	28, 103, 214
PspPI	GGNCC	3 cut(s)	349, 406, 455
PsuI	RGATCY	1 cut(s)	212
PsyI	GACNNNGTC	1 cut(s)	241
SalI	GTCGAC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	302, 535
SatI	GCNGC	7 cut(s)	68, 71, 87, 206, 345, 370, 375
Sau3AI	GATC	5 cut(s)	192, 212, 217, 226, 256
Sau96I	GGNCC	3 cut(s)	349, 406, 455
SchI	GAGTC	2 cut(s)	106, 260
ScrFI	CCNGG	4 cut(s)	23, 24, 180, 410
SinI	GGWCC	1 cut(s)	349
SmaI	CCCGGG	1 cut(s)	24
Sse9I	AATT	2 cut(s)	147, 221
SsiI	CCGC	8 cut(s)	67, 70, 86, 205, 330, 344, 347, 369
SspMI	CTAG	3 cut(s)	38, 378, 479
StyD4I	CCNGG	4 cut(s)	21, 22, 178, 408
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	5 cut(s)	110, 161, 310, 318, 448
TasI	AATT	2 cut(s)	147, 221
TauI	GCSGC	6 cut(s)	70, 73, 89, 208, 347, 372
Tru1I	TTAA	2 cut(s)	302, 535
Tru9I	TTAA	2 cut(s)	302, 535
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	180, 353, 516
TspGWI	ACGGA	1 cut(s)	184
TspMI	CCCGGG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	349
XmaI	CCCGGG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	3 cut(s)	38, 378, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.