Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

79718028 .. 79718258

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00141420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAAGACACCGGCGCCGAGATCCGTGATCATCATGAACCTCGACAACCCTCTCAACGTCGCCGTACGCGCGAGCACGCCTACCCCCGCCACCGTCACCGCATTCTCCCCCGACGGCGAGTGGATCGTGTCCGCCAACGTCTCCGGCACCGTCAAGATCCGGGGGACCCACAACGATTTCCTCCTCAAGAACGAGTTCAAGGTCCTCTCGGGTCGGATCGACGACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

76

Amino Acids

8.21

Weight (kDa)

8.21

Isoelectric Point (pI)

14.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 146
AccII	CGCG	2 cut(s)	69, 71
AciI	CCGC	3 cut(s)	87, 99, 132
AclWI	GGATC	4 cut(s)	15, 131, 151, 224
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	4 cut(s)	15, 131, 151, 224
Ama87I	CYCGRG	1 cut(s)	208
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	16, 71
AspS9I	GGNCC	2 cut(s)	165, 202
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	2 cut(s)	165, 202
BanI	GGYRCC	2 cut(s)	13, 146
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	77
BceAI	ACGGC	2 cut(s)	47, 130
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	165, 202
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	165, 202
BmiI	GGNNCC	4 cut(s)	15, 148, 166, 167
BmrFI	CCNGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	69, 71
BshNI	GGYRCC	2 cut(s)	13, 146
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	11, 144, 160
BsiWI	CGTACG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	145
BsmBI	CGTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	5 cut(s)	20, 27, 123, 156, 216
BspACI	CCGC	3 cut(s)	87, 99, 132
BspFNI	CGCG	2 cut(s)	69, 71
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	4 cut(s)	15, 148, 166, 167
BspPI	GGATC	4 cut(s)	15, 131, 151, 224
BspT107I	GGYRCC	2 cut(s)	13, 146
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	5 cut(s)	20, 27, 123, 156, 216
BssNI	GRCGYC	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	94, 151
BstACI	GRCGYC	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	73, 77
BstFNI	CGCG	2 cut(s)	69, 71
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 71
BstKTI	GATC	5 cut(s)	23, 30, 126, 159, 219
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	5 cut(s)	20, 27, 123, 156, 216
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	2 cut(s)	69, 71
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	20, 156
BstYI	RGATCY	2 cut(s)	20, 156
Cac8I	GCNNGC	2 cut(s)	73, 77
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	2 cut(s)	16, 71
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	165, 202
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	1 cut(s)	65
DinI	GGCGCC	1 cut(s)	15
DpnI	GATC	5 cut(s)	22, 29, 125, 158, 218
DpnII	GATC	5 cut(s)	20, 27, 123, 156, 216
EciI	GGCGGA	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	165, 202
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	2 cut(s)	165, 202
EgeI	GGCGCC	1 cut(s)	15
EheI	GGCGCC	1 cut(s)	15
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	1 cut(s)	37
FaiI	YATR	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	33
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	27
FspBI	CTAG	1 cut(s)	229
GlaI	GCGC	2 cut(s)	15, 70
HaeII	RGCGCY	1 cut(s)	17
HapII	CCGG	3 cut(s)	11, 144, 160
HhaI	GCGC	2 cut(s)	16, 71
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	14, 69
HinP1I	GCGC	2 cut(s)	14, 69
HpaII	CCGG	3 cut(s)	11, 144, 160
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	3 cut(s)	34, 154, 187
Hpy99I	CGWCG	3 cut(s)	62, 116, 224
HpyCH4III	ACNGT	2 cut(s)	94, 151
HpyCH4IV	ACGT	2 cut(s)	57, 138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	57, 138
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	2 cut(s)	14, 69
KasI	GGCGCC	1 cut(s)	13
KflI	GGGWCCC	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	20, 27, 123, 156, 216
LpnPI	CCDG	3 cut(s)	24, 157, 173
MaeI	CTAG	1 cut(s)	229
MaeII	ACGT	2 cut(s)	57, 138
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	5 cut(s)	22, 29, 125, 158, 218
MboI	GATC	5 cut(s)	20, 27, 123, 156, 216
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	2 cut(s)	20, 156
MhlI	GDGCHC	1 cut(s)	77
Mly113I	GGCGCC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	5 cut(s)	50, 60, 191, 194, 215
MroXI	GAANNNNTTC	1 cut(s)	194
MspI	CCGG	3 cut(s)	11, 144, 160
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	101
MvnI	CGCG	2 cut(s)	69, 71
MwoI	GCNNNNNNNGC	1 cut(s)	68
NarI	GGCGCC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	20, 27, 123, 156, 216
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	4 cut(s)	15, 148, 166, 167
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	94
PagI	TCATGA	1 cut(s)	33
PctI	GAATGC	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	194
Pfl23II	CGTACG	1 cut(s)	64
PluTI	GGCGCC	1 cut(s)	17
PpuMI	RGGWCCY	2 cut(s)	165, 202
Psp5II	RGGWCCY	2 cut(s)	165, 202
PspLI	CGTACG	1 cut(s)	64
PspN4I	GGNNCC	4 cut(s)	15, 148, 166, 167
PspPI	GGNCC	2 cut(s)	165, 202
PspPPI	RGGWCCY	2 cut(s)	165, 202
PsuI	RGATCY	2 cut(s)	20, 156
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
Sau3AI	GATC	5 cut(s)	20, 27, 123, 156, 216
Sau96I	GGNCC	2 cut(s)	165, 202
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	5 cut(s)	42, 60, 141, 204, 228
SfoI	GGCGCC	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	165, 202
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	3 cut(s)	87, 99, 132
SspDI	GGCGCC	1 cut(s)	13
SspMI	CTAG	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	94, 151
TaiI	ACGT	2 cut(s)	60, 141
TaqI	TCGA	2 cut(s)	42, 219
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	17, 50
TspGWI	ACGGA	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	165, 202
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.