Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

10924085 .. 10925924

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAACCTCGACAACCCTTTCAACGTCGTCGTCTACGCGGAGCACACATACCCTGCCACCGTCGCCAAATTCTCCCCCAACAGCGAGTGGATCACGTCCGCCGACGTCTCCAACACCGTCAGGATCTGGGGGACCCACAACTATTTCGTCCTCACTAATGAGTTCACGGTCGTCTCGAGTCGGATCGACGACCTCCAGTGGTCCGCCGACGGAATGAGGATCGTCGCTTGCGGCGAAGGCAAAGGGAGACCTTGCGGTTGCGCGGTGATGGAGGCGATGGATGCTTTCAGACCATCCAATAAACCCTCATCACAATCCACTTCAAAAAAACTCAGAGCTAGAAGCCAAAATCAAAAATCAACTCTTCTTCGTCTTCCTCACATCGCATTCTCTCAAACTCCTACAGAAAAAGGCAGCAGCGTATTCTCTCAATCATGGCGGATCTGTACGAAACGCTGCCGGACTCGGAAGAGGAGGACAACCGCCGCCATTGATGGCCTCTACTCGCCTATCTTTCTCGAAATTCTCCCGGCTCCGGCCCCTATGCAGCTTCGAATAACTTTTCTGCTGCTTCTCCGATCGCTTCCGCTTCGCCTCCATTCTCCTCAAGCTCTGCAGCTCCTTCCTCTTCCTCCACTCATCCTTTGTCTCCGTCGGGAGCGAGCAAGTCCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

226

Amino Acids

25.29

Weight (kDa)

10.09

Isoelectric Point (pI)

69.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	13 - 79	1.5e-07	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	38, 263
AclWI	GGATC	5 cut(s)	98, 131, 191, 227, 449
AcsI	RAATTY	2 cut(s)	68, 522
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	22, 324
AjiI	CACGTC	1 cut(s)	96
AluBI	AGCT	4 cut(s)	338, 550, 611, 619
AluI	AGCT	4 cut(s)	338, 550, 611, 619
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	4 cut(s)	112, 178, 241, 653
AlwI	GGATC	5 cut(s)	98, 131, 191, 227, 449
AlwNI	CAGNNNCTG	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	496, 537
ApeKI	GCWGC	6 cut(s)	414, 417, 456, 547, 568, 616
ApoI	RAATTY	2 cut(s)	68, 522
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	3 cut(s)	132, 201, 538
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	2 cut(s)	132, 201
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	6 cut(s)	426, 429, 443, 555, 559, 628
BccI	CCATC	4 cut(s)	262, 271, 301, 488
BcnI	CCSGG	1 cut(s)	530
BcoDI	GTCTC	4 cut(s)	112, 178, 241, 653
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	2 cut(s)	402, 614
BisI	GCNGC	8 cut(s)	232, 415, 418, 457, 486, 548, 569, 617
BlsI	GCNGC	8 cut(s)	233, 416, 419, 458, 487, 549, 570, 618
Bme1390I	CCNGG	1 cut(s)	530
Bme18I	GGWCC	2 cut(s)	132, 201
BmeT110I	CYCGRG	1 cut(s)	175
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	3 cut(s)	132, 201, 538
BmiI	GGNNCC	4 cut(s)	133, 134, 534, 540
BmrFI	CCNGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	553
BpuEI	CTTGAG	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	196
BseGI	GGATG	3 cut(s)	286, 293, 639
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	487, 594
BseXI	GCAGC	6 cut(s)	426, 429, 443, 555, 559, 628
Bsh1236I	CGCG	2 cut(s)	38, 263
Bsh1285I	CGRYCG	2 cut(s)	171, 581
BshFI	GGCC	2 cut(s)	498, 539
BsiEI	CGRYCG	2 cut(s)	171, 581
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	460, 530, 536
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	4 cut(s)	112, 178, 241, 653
BsmBI	CGTCTC	2 cut(s)	112, 178
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	498, 539
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
BspANI	GGCC	2 cut(s)	498, 539
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	2 cut(s)	38, 263
BspLI	GGNNCC	4 cut(s)	133, 134, 534, 540
BspMAI	CTGCAG	1 cut(s)	618
BspPI	GGATC	5 cut(s)	98, 131, 191, 227, 449
BspT104I	TTCGAA	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
BssNI	GRCGYC	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	61, 118, 169
Bst6I	CTCTTC	3 cut(s)	369, 464, 633
BstACI	GRCGYC	1 cut(s)	105
BstBI	TTCGAA	1 cut(s)	553
BstC8I	GCNNGC	2 cut(s)	229, 663
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	3 cut(s)	286, 293, 639
BstFNI	CGCG	2 cut(s)	38, 263
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	6 cut(s)	93, 126, 186, 222, 444, 581
BstMAI	GTCTC	4 cut(s)	112, 178, 241, 653
BstMBI	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
BstMCI	CGRYCG	2 cut(s)	171, 581
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 237, 281
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	2 cut(s)	402, 614
BstUI	CGCG	2 cut(s)	38, 263
BstV1I	GCAGC	6 cut(s)	426, 429, 443, 555, 559, 628
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	123, 441
BstYI	RGATCY	2 cut(s)	123, 441
BsuRI	GGCC	2 cut(s)	498, 539
BtgZI	GCGATG	2 cut(s)	290, 367
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	3 cut(s)	286, 293, 639
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	229, 663
CaiI	CAGNNNCTG	1 cut(s)	126
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	3 cut(s)	132, 201, 538
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	1 cut(s)	435
CviJI	RGCY	8 cut(s)	338, 345, 498, 533, 539, 550, 611, 619
CviKI_1	RGCY	8 cut(s)	338, 345, 498, 533, 539, 550, 611, 619
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	6 cut(s)	92, 125, 185, 221, 443, 580
DpnII	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
Eam1104I	CTCTTC	3 cut(s)	369, 464, 633
EarI	CTCTTC	3 cut(s)	369, 464, 633
EciI	GGCGGA	3 cut(s)	88, 193, 454
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	132, 201
Eco88I	CYCGRG	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	132
Esp3I	CGTCTC	2 cut(s)	112, 178
FaeI	CATG	1 cut(s)	438
FaiI	YATR	3 cut(s)	49, 436, 545
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	8 cut(s)	232, 415, 418, 457, 486, 548, 569, 617
FokI	GGATG	3 cut(s)	280, 293, 626
Fsp4HI	GCNGC	8 cut(s)	232, 415, 418, 457, 486, 548, 569, 617
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	8 cut(s)	232, 415, 418, 457, 486, 548, 569, 617
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	498, 539
HapII	CCGG	3 cut(s)	460, 530, 536
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	1 cut(s)	438
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	178, 463
HpaII	CCGG	3 cut(s)	460, 530, 536
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	34, 165
Hpy188I	TCNGA	5 cut(s)	183, 290, 335, 468, 578
Hpy188III	TCNNGA	4 cut(s)	121, 175, 518, 656
Hpy8I	GTNNAC	2 cut(s)	34, 165
Hpy99I	CGWCG	8 cut(s)	29, 32, 65, 107, 191, 212, 227, 657
HpyAV	CCTTC	2 cut(s)	230, 632
HpyCH4III	ACNGT	3 cut(s)	61, 118, 169
HpyCH4IV	ACGT	3 cut(s)	24, 95, 105
HpyCH4V	TGCA	2 cut(s)	547, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 237, 281
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	3 cut(s)	24, 95, 105
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	438
HspAI	GCGC	1 cut(s)	261
KflI	GGGWCCC	1 cut(s)	132
Kzo9I	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
LmnI	GCTCC	4 cut(s)	40, 538, 624, 658
LpnPI	CCDG	7 cut(s)	66, 106, 112, 209, 473, 543, 549
Lsp1109I	GCAGC	6 cut(s)	426, 429, 443, 555, 559, 628
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	3 cut(s)	24, 95, 105
MalI	GATC	6 cut(s)	92, 125, 185, 221, 443, 580
MboI	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
MboII	GAAGA	5 cut(s)	356, 359, 365, 481, 620
MflI	RGATCY	2 cut(s)	123, 441
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	68, 522
MlyI	GAGTC	2 cut(s)	187, 457
MmeI	TCCRAC	2 cut(s)	135, 161
MspI	CCGG	3 cut(s)	460, 530, 536
MspR9I	CCNGG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	386
MvnI	CGCG	2 cut(s)	38, 263
MwoI	GCNNNNNNNGC	3 cut(s)	62, 237, 281
NciI	CCSGG	1 cut(s)	530
NdeII	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	4 cut(s)	133, 134, 534, 540
NspV	TTCGAA	1 cut(s)	553
PaeR7I	CTCGAG	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 231
PctI	GAATGC	1 cut(s)	386
PkrI	GCNGC	8 cut(s)	233, 416, 419, 458, 487, 549, 570, 618
Ple19I	CGATCG	1 cut(s)	581
PleI	GAGTC	2 cut(s)	186, 457
PpsI	GAGTC	2 cut(s)	186, 457
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	4 cut(s)	133, 134, 534, 540
PspPI	GGNCC	3 cut(s)	132, 201, 538
PspPPI	RGGWCCY	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	618
PstNI	CAGNNNCTG	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	123, 441
PvuI	CGATCG	1 cut(s)	581
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SatI	GCNGC	8 cut(s)	232, 415, 418, 457, 486, 548, 569, 617
Sau3AI	GATC	6 cut(s)	90, 123, 183, 219, 441, 578
Sau96I	GGNCC	3 cut(s)	132, 201, 538
SchI	GAGTC	2 cut(s)	187, 457
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	2 cut(s)	402, 614
Sfr274I	CTCGAG	1 cut(s)	175
SfuI	TTCGAA	1 cut(s)	553
SinI	GGWCC	2 cut(s)	132, 201
SlaI	CTCGAG	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	175, 606
SmoI	CTYRAG	2 cut(s)	175, 606
Sse9I	AATT	2 cut(s)	68, 522
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	61, 118, 169
TaiI	ACGT	3 cut(s)	27, 98, 108
TaqI	TCGA	5 cut(s)	9, 176, 186, 519, 553
TasI	AATT	2 cut(s)	68, 522
TauI	GCSGC	2 cut(s)	234, 488
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	6 cut(s)	414, 417, 456, 547, 568, 616
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	225, 641
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	132, 201
XapI	RAATTY	2 cut(s)	68, 522
XhoI	CTCGAG	1 cut(s)	175
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.