Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

2759421 .. 2759720

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG016800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGCTGCGTGCTGTCGACAGAGCGCGGCCGGGGGATCCTGATCTCCAGTGACCCCAAATCCAACAAGCTCCTCTACACCAATGGCAGATCCGAGATCATCATGAACCTCGACAACCCTCTCGACGTCACCGTCTACGCCGAGCACGCCTACCCGGCCACCGTCACCACATTCTCCCCCAACGGTGAGTGGATCGCGTCCGCTGACGCCTCCGGCACCTTCAGGATCTGGGGGACCCACAACGATTTCGTGCTCAAGAACGAGTTCAAGGTCCTCTCGGGTCGGATCGACGACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

99

Amino Acids

10.92

Weight (kDa)

5.18

Isoelectric Point (pI)

18.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	2 cut(s)	17, 135
AccII	CGCG	2 cut(s)	27, 197
AciI	CCGC	2 cut(s)	27, 201
AclWI	GGATC	6 cut(s)	31, 44, 84, 200, 233, 293
AcoI	YGGCCR	2 cut(s)	28, 156
AcuI	CTGAAG	1 cut(s)	205
AcyI	GRCGYC	2 cut(s)	126, 207
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	2 cut(s)	147, 255
AlwI	GGATC	6 cut(s)	31, 44, 84, 200, 233, 293
AlwNI	CAGNNNCTG	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	28, 156
ApeKI	GCWGC	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	234, 271
AsuC2I	CCSGG	2 cut(s)	32, 155
AsuHPI	GGTGA	3 cut(s)	121, 157, 197
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	234, 271
BamHI	GGATCC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	215
Bbv12I	GWGCWC	2 cut(s)	147, 255
BcnI	CCSGG	2 cut(s)	32, 155
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	7, 28
BlsI	GCNGC	2 cut(s)	8, 29
Bme1390I	CCNGG	2 cut(s)	32, 155
Bme18I	GGWCC	2 cut(s)	234, 271
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	234, 271
BmiI	GGNNCC	4 cut(s)	38, 217, 235, 236
BmrFI	CCNGG	2 cut(s)	32, 155
BpmI	CTGGAG	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	2 cut(s)	32, 155
BsaBI	GATNNNNATC	1 cut(s)	41
BsaHI	GRCGYC	2 cut(s)	126, 207
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	28
Bsh1236I	CGCG	2 cut(s)	27, 197
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	30, 158
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	147, 255
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	3 cut(s)	31, 155, 213
BslFI	GGGAC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	30, 158
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	2 cut(s)	147, 255
Bsp143I	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
BspACI	CCGC	2 cut(s)	27, 201
BspANI	GGCC	2 cut(s)	30, 158
BspFNI	CGCG	2 cut(s)	27, 197
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	4 cut(s)	38, 217, 235, 236
BspPI	GGATC	6 cut(s)	31, 44, 84, 200, 233, 293
BspT107I	GGYRCC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
BssNI	GRCGYC	2 cut(s)	126, 207
Bst4CI	ACNGT	3 cut(s)	133, 163, 185
BstACI	GRCGYC	2 cut(s)	126, 207
BstC8I	GCNNGC	2 cut(s)	11, 147
BstFNI	CGCG	2 cut(s)	27, 197
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	7 cut(s)	39, 45, 92, 99, 195, 228, 288
BstMBI	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 155
BstSCI	CCNGG	2 cut(s)	30, 153
BstUI	CGCG	2 cut(s)	27, 197
BstX2I	RGATCY	3 cut(s)	36, 89, 225
BstYI	RGATCY	3 cut(s)	36, 89, 225
BstZI	CGGCCG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	30, 158
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	11, 147
CaiI	CAGNNNCTG	1 cut(s)	228
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	234, 271
CseI	GACGC	2 cut(s)	186, 215
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	6, 30, 70, 158
CviKI_1	RGCY	4 cut(s)	6, 30, 70, 158
DpnI	GATC	7 cut(s)	38, 44, 91, 98, 194, 227, 287
DpnII	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	2 cut(s)	28, 156
EagI	CGGCCG	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	28
Eco47I	GGWCC	2 cut(s)	234, 271
Eco52I	CGGCCG	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	205
Eco88I	CYCGRG	1 cut(s)	277
EcoO109I	RGGNCCY	2 cut(s)	234, 271
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	2 cut(s)	17, 135
Fnu4HI	GCNGC	2 cut(s)	7, 28
Fsp4HI	GCNGC	2 cut(s)	7, 28
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	7, 28
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	30, 158
HapII	CCGG	3 cut(s)	31, 155, 213
HgaI	GACGC	2 cut(s)	186, 215
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	2 cut(s)	126, 207
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HpaII	CCGG	3 cut(s)	31, 155, 213
HphI	GGTGA	3 cut(s)	121, 157, 197
Hpy166II	GTNNAC	2 cut(s)	18, 136
Hpy188I	TCNGA	2 cut(s)	94, 285
Hpy188III	TCNNGA	5 cut(s)	40, 103, 122, 223, 256
Hpy8I	GTNNAC	2 cut(s)	18, 136
Hpy99I	CGWCG	2 cut(s)	128, 293
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	3 cut(s)	133, 163, 185
HpyCH4IV	ACGT	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 155
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	126, 207
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	25
KflI	GGGWCCC	1 cut(s)	234
Kzo9I	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	7 cut(s)	44, 53, 61, 168, 208, 214, 226
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	50, 127, 163
MalI	GATC	7 cut(s)	38, 44, 91, 98, 194, 227, 287
MboI	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
MflI	RGATCY	3 cut(s)	36, 89, 225
MhlI	GDGCHC	2 cut(s)	147, 255
MmeI	TCCRAC	2 cut(s)	87, 263
MnlI	CCTC	5 cut(s)	83, 119, 129, 220, 284
MroXI	GAANNNNTTC	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	3 cut(s)	31, 155, 213
MspR9I	CCNGG	2 cut(s)	32, 155
MvnI	CGCG	2 cut(s)	27, 197
MwoI	GCNNNNNNNGC	2 cut(s)	146, 155
NciI	CCSGG	2 cut(s)	32, 155
NdeII	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	4 cut(s)	38, 217, 235, 236
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	3 cut(s)	50, 127, 163
PagI	TCATGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	8, 29
PpuMI	RGGWCCY	2 cut(s)	234, 271
Psp5II	RGGWCCY	2 cut(s)	234, 271
PspN4I	GGNNCC	4 cut(s)	38, 217, 235, 236
PspPI	GGNCC	2 cut(s)	234, 271
PspPPI	RGGWCCY	2 cut(s)	234, 271
PstNI	CAGNNNCTG	1 cut(s)	228
PsuI	RGATCY	3 cut(s)	36, 89, 225
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	7, 28
Sau3AI	GATC	7 cut(s)	36, 42, 89, 96, 192, 225, 285
Sau96I	GGNCC	2 cut(s)	234, 271
ScrFI	CCNGG	2 cut(s)	32, 155
SduI	GDGCHC	2 cut(s)	147, 255
SetI	ASST	5 cut(s)	72, 111, 129, 221, 273
SinI	GGWCC	2 cut(s)	234, 271
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	2 cut(s)	27, 201
StyD4I	CCNGG	2 cut(s)	30, 153
TaaI	ACNGT	3 cut(s)	133, 163, 185
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	4 cut(s)	17, 111, 123, 288
TauI	GCSGC	1 cut(s)	30
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	3 cut(s)	50, 127, 163
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	3 cut(s)	50, 127, 163
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	234, 271
XmiI	GTMKAC	2 cut(s)	17, 135
XmnI	GAANNNNTTC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.