Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009948.1

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Forward (+)

7700 .. 8002

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009948.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgggctgcatgccgtcgattgagcgcggccaggggatcttgatctccggcaaccccaaatcaaacaggctcctctacaccaatggcagatcagtgatcatcatgaacctcgacaaacctctggacgtcgccgtctacgctgagcactcctacccagccaccgtcgccagattctcccccaacggccaatggatcttgtccgccgacttctccggcaccatcaggatctgggggacccacaacaatttcatgctcatgaacgagttcaagatcttctcgggtcggatcgacgacctgcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

100

Amino Acids

11.21

Weight (kDa)

7.93

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	27, 201
AclWI	GGATC	4 cut(s)	44, 200, 233, 293
AcoI	YGGCCR	2 cut(s)	28, 184
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	30
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	4 cut(s)	44, 200, 233, 293
AlwNI	CAGNNNCTG	1 cut(s)	228
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	28, 184
ApeKI	GCWGC	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	147
BccI	CCATC	1 cut(s)	227
BceAI	ACGGC	2 cut(s)	116, 199
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	296
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	7, 28
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	2 cut(s)	8, 29
Bme1390I	CCNGG	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	4 cut(s)	71, 217, 235, 236
BmrFI	CCNGG	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	30, 186
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	48, 213
BslFI	GGGAC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	30, 186
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
Bsp1720I	GCTNAGC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	27, 201
BspANI	GGCC	2 cut(s)	30, 186
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	2 cut(s)	102, 255
BspLI	GGNNCC	4 cut(s)	71, 217, 235, 236
BspMAI	CTGCAG	1 cut(s)	300
BspPI	GGATC	4 cut(s)	44, 200, 233, 293
BspT107I	GGYRCC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	8 cut(s)	39, 45, 92, 99, 195, 228, 273, 288
BstMBI	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 164
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	4 cut(s)	36, 192, 225, 270
BstYI	RGATCY	4 cut(s)	36, 192, 225, 270
BsuRI	GGCC	2 cut(s)	30, 186
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	228
CciI	TCATGA	2 cut(s)	102, 255
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	234
CviAII	CATG	4 cut(s)	10, 103, 250, 256
CviJI	RGCY	5 cut(s)	6, 30, 70, 158, 186
CviKI_1	RGCY	5 cut(s)	6, 30, 70, 158, 186
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	8 cut(s)	38, 44, 91, 98, 194, 227, 272, 287
DpnII	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	2 cut(s)	28, 184
EciI	GGCGGA	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	4 cut(s)	13, 106, 253, 259
FaiI	YATR	4 cut(s)	11, 104, 251, 257
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	4 cut(s)	9, 102, 249, 255
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	7, 28
Fsp4HI	GCNGC	2 cut(s)	7, 28
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	7, 28
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	30, 186
HapII	CCGG	2 cut(s)	48, 213
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	13, 106, 253, 259
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	2 cut(s)	48, 213
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	6 cut(s)	40, 103, 122, 223, 256, 268
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	4 cut(s)	19, 131, 167, 293
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	9, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 164
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	13, 106, 253, 259
HspAI	GCGC	1 cut(s)	25
KflI	GGGWCCC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
LmnI	GCTCC	1 cut(s)	75
MaeII	ACGT	1 cut(s)	126
MalI	GATC	8 cut(s)	38, 44, 91, 98, 194, 227, 272, 287
MboI	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
MboII	GAAGA	1 cut(s)	265
MflI	RGATCY	4 cut(s)	36, 192, 225, 270
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	83, 119, 129
MroXI	GAANNNNTTC	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	2 cut(s)	48, 213
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	137, 164
NdeII	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
NlaIII	CATG	4 cut(s)	13, 106, 253, 259
NlaIV	GGNNCC	4 cut(s)	71, 217, 235, 236
NspI	RCATGY	1 cut(s)	13
PaeI	GCATGC	1 cut(s)	13
PagI	TCATGA	2 cut(s)	102, 255
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	8, 29
PpuMI	RGGWCCY	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	71, 217, 235, 236
PspPI	GGNCC	1 cut(s)	234
PspPPI	RGGWCCY	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	300
PstNI	CAGNNNCTG	1 cut(s)	228
PsuI	RGATCY	4 cut(s)	36, 192, 225, 270
RseI	CAYNNNNRTG	1 cut(s)	254
SatI	GCNGC	2 cut(s)	7, 28
Sau3AI	GATC	8 cut(s)	36, 42, 89, 96, 192, 225, 270, 285
Sau96I	GGNCC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	4 cut(s)	111, 121, 129, 297
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	244
SsiI	CCGC	2 cut(s)	27, 201
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	17, 111, 288
TasI	AATT	1 cut(s)	244
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	171
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	119, 238, 272
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	234
XceI	RCATGY	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.