Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

8757855 .. 8758181

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGACACCAGCGCCGAGATCCATGTTCATCATGAACCTCGACAACCCTCTCAATGTCGCAGTCTGCGCGGAGCACGCCTACCCTGCCACCGTCGCCAGATTCTCCCCCAACGGCGAGTGGATCGCGTCTGCCGACATCTCCGGCACCGTCAGGATCTGGGGGACCCATAACGATTTCTTCCTCAAGAACGAGTTCAAGGTCGTCTCGGGTCAGATCGACGACCTCCAGTGGTCTGGCGACGGAATGAGGATCGTCGCTTGCAGGGAAGGCAAAGGGAGACCTTGCAGCTGCGTGGTGATGAAAGCGGTGGATGCTTTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

7.68

Isoelectric Point (pI)

20.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	25 - 88	2e-08	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	26 - 88	9.6e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccII	CGCG	2 cut(s)	71, 128
AciI	CCGC	2 cut(s)	71, 308
AclWI	GGATC	4 cut(s)	15, 131, 164, 260
AgsI	TTSAA	1 cut(s)	199
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	211, 274
AlwI	GGATC	4 cut(s)	15, 131, 164, 260
AlwNI	CAGNNNCTG	1 cut(s)	159
Ama87I	CYCGRG	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	288, 291
Asp700I	GAANNNNTTC	1 cut(s)	194
AspLEI	GCGC	2 cut(s)	16, 71
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	278, 300
BceAI	ACGGC	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	211, 274
BfoI	RGCGCY	1 cut(s)	17
BisI	GCNGC	2 cut(s)	289, 292
BlsI	GCNGC	2 cut(s)	290, 293
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	3 cut(s)	148, 166, 167
BmsI	GCATC	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	170
BsaI	GGTCTC	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	2 cut(s)	278, 300
Bsh1236I	CGCG	2 cut(s)	71, 128
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	211, 274
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	5 cut(s)	20, 123, 156, 216, 252
BspACI	CCGC	2 cut(s)	71, 308
BspFNI	CGCG	2 cut(s)	71, 128
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	148, 166, 167
BspPI	GGATC	4 cut(s)	15, 131, 164, 260
BspT107I	GGYRCC	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	5 cut(s)	20, 123, 156, 216, 252
Bst4CI	ACNGT	2 cut(s)	94, 151
BstC8I	GCNNGC	2 cut(s)	78, 262
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	2 cut(s)	71, 128
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	2 cut(s)	16, 71
BstKTI	GATC	5 cut(s)	23, 126, 159, 219, 255
BstMAI	GTCTC	2 cut(s)	211, 274
BstMBI	GATC	5 cut(s)	20, 123, 156, 216, 252
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 77, 86, 95, 270, 314
BstUI	CGCG	2 cut(s)	71, 128
BstV1I	GCAGC	2 cut(s)	278, 300
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	20, 156
BstXI	CCANNNNNNTGG	1 cut(s)	236
BstYI	RGATCY	2 cut(s)	20, 156
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	78, 262
CaiI	CAGNNNCTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	2 cut(s)	16, 71
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	1 cut(s)	117
CviAII	CATG	2 cut(s)	25, 34
CviJI	RGCY	1 cut(s)	291
CviKI_1	RGCY	1 cut(s)	291
DpnI	GATC	5 cut(s)	22, 125, 158, 218, 254
DpnII	GATC	5 cut(s)	20, 123, 156, 216, 252
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	2 cut(s)	28, 37
FaiI	YATR	3 cut(s)	26, 35, 171
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	2 cut(s)	24, 33
Fnu4HI	GCNGC	2 cut(s)	289, 292
Fsp4HI	GCNGC	2 cut(s)	289, 292
GlaI	GCGC	2 cut(s)	15, 70
GluI	GCNGC	2 cut(s)	289, 292
GsuI	CTGGAG	1 cut(s)	212
HaeII	RGCGCY	1 cut(s)	17
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	2 cut(s)	16, 71
Hin1II	CATG	2 cut(s)	28, 37
Hin6I	GCGC	2 cut(s)	14, 69
HinP1I	GCGC	2 cut(s)	14, 69
HinfI	GANTC	1 cut(s)	102
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	310
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	3 cut(s)	34, 154, 187
Hpy99I	CGWCG	4 cut(s)	98, 224, 245, 260
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	94, 151
HpyCH4V	TGCA	2 cut(s)	264, 288
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 77, 86, 95, 270, 314
Hsp92II	CATG	2 cut(s)	28, 37
HspAI	GCGC	2 cut(s)	14, 69
KflI	GGGWCCC	1 cut(s)	165
Kzo9I	GATC	5 cut(s)	20, 123, 156, 216, 252
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	2 cut(s)	278, 300
LweI	GCATC	1 cut(s)	304
MalI	GATC	5 cut(s)	22, 125, 158, 218, 254
MboI	GATC	5 cut(s)	20, 123, 156, 216, 252
MboII	GAAGA	2 cut(s)	16, 172
MflI	RGATCY	2 cut(s)	20, 156
MhlI	GDGCHC	1 cut(s)	78
MnlI	CCTC	5 cut(s)	50, 60, 194, 236, 243
MroXI	GAANNNNTTC	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	1 cut(s)	144
MvnI	CGCG	2 cut(s)	71, 128
MwoI	GCNNNNNNNGC	6 cut(s)	68, 77, 86, 95, 270, 314
NdeII	GATC	5 cut(s)	20, 123, 156, 216, 252
NlaIII	CATG	2 cut(s)	28, 37
NlaIV	GGNNCC	3 cut(s)	148, 166, 167
NmeAIII	GCCGAG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	290, 293
PpuMI	RGGWCCY	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	165
PspN4I	GGNNCC	3 cut(s)	148, 166, 167
PspPI	GGNCC	1 cut(s)	165
PspPPI	RGGWCCY	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	159
PsuI	RGATCY	2 cut(s)	20, 156
PvuII	CAGCTG	1 cut(s)	291
SatI	GCNGC	2 cut(s)	289, 292
Sau3AI	GATC	5 cut(s)	20, 123, 156, 216, 252
Sau96I	GGNCC	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	6 cut(s)	42, 204, 228, 286, 293, 326
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	2 cut(s)	71, 308
TaaI	ACNGT	2 cut(s)	94, 151
TaqI	TCGA	2 cut(s)	42, 219
TfiI	GAWTC	1 cut(s)	102
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	2 cut(s)	288, 291
TspDTI	ATGAA	4 cut(s)	17, 19, 50, 317
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	165
XmnI	GAANNNNTTC	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.