Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004555

Physical Location & Seq

Genomic Coordinates Reverse (-)

85605197 .. 85605448

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG554100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGCTGCCTGCCGTCGACGGAGCGCGGCCGGGGGATCCTGATCTCCGGCGACCCCAAATCCAACAGGCTCCTCTACACCAATGGCAGATCCGTGATCATCATGAACCTCGACAACCCTCTCGACGTCGCCGTCTACGCCGAGCACGCCTACCCGGCCACCGTCGCCAGATTCTCCCCCAACGGCGAGTGGATCGCGTCCGCCGACGTCTCCGGCACCGTCAGGATCTGCAGGACCGTAAAACTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005884 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0030832 GO:0030834 GO:0030836 GO:0030863 GO:0030864 GO:0031461 GO:0032535 GO:0032956 GO:0032970 GO:0032984 GO:0032991 GO:0033043 GO:0042641 GO:0042643 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043243 GO:0043244 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044877 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051261 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0080008 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0110053 GO:1901879 GO:1901881 GO:1902494 GO:1902903 GO:1902905 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

83

Amino Acids

9.02

Weight (kDa)

8.77

Isoelectric Point (pI)

20.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004555)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0399801 RchiOBHm_Chr7g0194371
rosa_laevigata	RLG00000002073 RLG00000011634 RLG00000016881 RLG00000019266 RLG00000022018 RLG00000024819 RLG00000028127
rosa_multiflora	Rmu_co7975970.1_g000001 Rmu_co8294087.1_g000001 Rmu_co8393573.1_g000001 Rmu_sc0001231.1_g000029 Rmu_sc0009948.1_g000003 Rmu_sc0017908.1_g000006 Rmu_sc0018292.1_g000002 Rmu_sc0024851.1_g000001 Rmu_sc0024852.1_g000002 Rmu_sc0033504.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141420 Rroxscaffold_5G00352910
rosa_rugosa	Rorug03G0338100
rosa_samantha	Rh1DG016800 Rh3AG074900 Rh3BG076800 Rh3CG076400 Rh4CG043600 Rh5DG554100 Rh6CG102100 Rh6CG481800 Rh6DG093700 Rh7BG261200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	131
AatII	GACGTC	2 cut(s)	129, 210
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	2 cut(s)	17, 135
AccII	CGCG	2 cut(s)	27, 197
AciI	CCGC	2 cut(s)	27, 201
AclWI	GGATC	5 cut(s)	31, 44, 84, 200, 233
AcoI	YGGCCR	2 cut(s)	28, 156
AcyI	GRCGYC	2 cut(s)	126, 207
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	5 cut(s)	31, 44, 84, 200, 233
AlwNI	CAGNNNCTG	1 cut(s)	228
AoxI	GGCC	2 cut(s)	28, 156
ApeKI	GCWGC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	234
AsuC2I	CCSGG	2 cut(s)	32, 155
AvaII	GGWCC	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	147
BceAI	ACGGC	2 cut(s)	116, 199
BclI	TGATCA	1 cut(s)	96
BcnI	CCSGG	2 cut(s)	32, 155
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	7, 28
BlsI	GCNGC	2 cut(s)	8, 29
Bme1390I	CCNGG	2 cut(s)	32, 155
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	3 cut(s)	38, 71, 217
BmrFI	CCNGG	2 cut(s)	32, 155
BpuMI	CCSGG	2 cut(s)	32, 155
BsaBI	GATNNNNATC	1 cut(s)	41
BsaHI	GRCGYC	2 cut(s)	126, 207
BsaJI	CCNNGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	28
Bsh1236I	CGCG	2 cut(s)	27, 197
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	30, 158
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	31, 48, 155, 213
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	30, 158
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
BspACI	CCGC	2 cut(s)	27, 201
BspANI	GGCC	2 cut(s)	30, 158
BspFNI	CGCG	2 cut(s)	27, 197
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	38, 71, 217
BspMAI	CTGCAG	1 cut(s)	233
BspPI	GGATC	5 cut(s)	31, 44, 84, 200, 233
BspT107I	GGYRCC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
BssNI	GRCGYC	2 cut(s)	126, 207
Bst4CI	ACNGT	3 cut(s)	163, 220, 238
BstACI	GRCGYC	2 cut(s)	126, 207
BstC8I	GCNNGC	2 cut(s)	11, 147
BstFNI	CGCG	2 cut(s)	27, 197
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	6 cut(s)	39, 45, 92, 99, 195, 228
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 146, 155, 164
BstSCI	CCNGG	2 cut(s)	30, 153
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	2 cut(s)	27, 197
BstX2I	RGATCY	3 cut(s)	36, 89, 225
BstYI	RGATCY	3 cut(s)	36, 89, 225
BstZI	CGGCCG	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	30, 158
Cac8I	GCNNGC	2 cut(s)	11, 147
CaiI	CAGNNNCTG	1 cut(s)	228
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	234
CseI	GACGC	1 cut(s)	186
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	4 cut(s)	6, 30, 70, 158
CviKI_1	RGCY	4 cut(s)	6, 30, 70, 158
DpnI	GATC	6 cut(s)	38, 44, 91, 98, 194, 227
DpnII	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
DrdI	GACNNNNNNGTC	1 cut(s)	131
DseDI	GACNNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	2 cut(s)	28, 156
EagI	CGGCCG	1 cut(s)	28
EciI	GGCGGA	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	28
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	106
FaiI	YATR	1 cut(s)	104
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	2 cut(s)	17, 135
Fnu4HI	GCNGC	2 cut(s)	7, 28
Fsp4HI	GCNGC	2 cut(s)	7, 28
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	7, 28
HaeIII	GGCC	2 cut(s)	30, 158
HapII	CCGG	4 cut(s)	31, 48, 155, 213
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	27
Hin1I	GRCGYC	2 cut(s)	126, 207
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	4 cut(s)	31, 48, 155, 213
Hpy166II	GTNNAC	2 cut(s)	18, 136
Hpy188III	TCNNGA	4 cut(s)	40, 103, 122, 223
Hpy8I	GTNNAC	2 cut(s)	18, 136
Hpy99I	CGWCG	6 cut(s)	19, 22, 128, 131, 167, 209
HpyCH4III	ACNGT	3 cut(s)	163, 220, 238
HpyCH4IV	ACGT	2 cut(s)	126, 207
HpyCH4V	TGCA	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 146, 155, 164
HpySE526I	ACGT	2 cut(s)	126, 207
Hsp92I	GRCGYC	2 cut(s)	126, 207
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
LmnI	GCTCC	2 cut(s)	22, 75
MaeII	ACGT	2 cut(s)	126, 207
MalI	GATC	6 cut(s)	38, 44, 91, 98, 194, 227
MboI	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
MflI	RGATCY	3 cut(s)	36, 89, 225
MhlI	GDGCHC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	83, 119, 129
MseI	TTAA	1 cut(s)	250
MspI	CCGG	4 cut(s)	31, 48, 155, 213
MspR9I	CCNGG	2 cut(s)	32, 155
MvnI	CGCG	2 cut(s)	27, 197
MwoI	GCNNNNNNNGC	4 cut(s)	137, 146, 155, 164
NciI	CCSGG	2 cut(s)	32, 155
NdeII	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	3 cut(s)	38, 71, 217
NmeAIII	GCCGAG	1 cut(s)	166
PagI	TCATGA	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 201
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	8, 29
PspN4I	GGNNCC	3 cut(s)	38, 71, 217
PspPI	GGNCC	1 cut(s)	234
PstI	CTGCAG	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	228
PsuI	RGATCY	3 cut(s)	36, 89, 225
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	250
SatI	GCNGC	2 cut(s)	7, 28
Sau3AI	GATC	6 cut(s)	36, 42, 89, 96, 192, 225
Sau96I	GGNCC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	32, 155
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	3 cut(s)	111, 129, 210
SfcI	CTRYAG	1 cut(s)	229
SgrDI	CGTCGACG	1 cut(s)	16
SinI	GGWCC	1 cut(s)	234
SsiI	CCGC	2 cut(s)	27, 201
StyD4I	CCNGG	2 cut(s)	30, 153
TaaI	ACNGT	3 cut(s)	163, 220, 238
TaiI	ACGT	2 cut(s)	129, 210
TaqI	TCGA	3 cut(s)	17, 111, 123
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	250
Tru9I	TTAA	1 cut(s)	250
TseI	GCWGC	1 cut(s)	6
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	2 cut(s)	35, 82
VpaK11BI	GGWCC	1 cut(s)	234
XmiI	GTMKAC	2 cut(s)	17, 135
ZraI	GACGTC	2 cut(s)	127, 208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.