RchiOBHm_Chr4g0401931

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005939
Physical Location & Seq
Reverse (-)
20404860 .. 20406375
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37382

Sequence Viewer

Length: 447 bp
ATGACCTCGACCGAGACGGAGGACGTCGTACTACGTCGCACCGCCATCACCGATTACTGCAATAGGTTACTCCAGCACAAGGAGCTCGACTCCCGAATCCACGCAGGAGTTAAGGAGGAGTTTGGAAAAACTGAAGATGATTTGAAGTCGCTTAAAAGTGTTGTGTGTTCTTCTCTATGGACCCCGGGAACAGGGAAGACATTGCTAGCCAGAGAAATTGCAAGAAAGAGAGATGCTAACTTTCTAAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTTATTGTATAAGATGAGGAATTTATGTCTGTTTGAGGTCTCGAATTTTAGATTCTTCATGCCAATCAGATATGTATTCCTTTCCAATAATCCAATTGATTGCTTGGAGTGGGTAGGTTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

148

Amino Acids

16.93

Weight (kDa)

8.87

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
AciI CCGC 1 cut(s) 42
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 3 cut(s) 255, 340, 364
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 79, 191
AgsI TTSAA 2 cut(s) 145, 260
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 2 cut(s) 85, 278
AluI AGCT 2 cut(s) 85, 278
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 8, 364
AlwI GGATC 1 cut(s) 280
Ama87I CYCGRG 1 cut(s) 184
ApoI RAATTY 3 cut(s) 255, 340, 364
AspS9I GGNCC 2 cut(s) 180, 294
AsuC2I CCSGG 2 cut(s) 185, 186
AsuHPI GGTGA 2 cut(s) 40, 262
AsuNHI GCTAGC 1 cut(s) 205
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 2 cut(s) 180, 294
BanII GRGCYC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 2 cut(s) 185, 186
BcoDI GTCTC 2 cut(s) 8, 364
BfaI CTAG 1 cut(s) 206
Bme1390I CCNGG 3 cut(s) 185, 186, 292
Bme18I GGWCC 2 cut(s) 180, 294
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 180, 294
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 3 cut(s) 185, 186, 292
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 209
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 1 cut(s) 56
BpuMI CCSGG 2 cut(s) 185, 186
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 183, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 191
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 183, 184
BseLI CCNNNNNNNGG 2 cut(s) 79, 191
BseMI GCAATG 1 cut(s) 200
BseRI GAGGAG 2 cut(s) 131, 323
Bsh1285I CGRYCG 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 79, 191
BsmAI GTCTC 2 cut(s) 8, 364
BsmBI CGTCTC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 2 cut(s) 272, 300
BspACI CCGC 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 182
BspOI GCTAGC 1 cut(s) 209
BspPI GGATC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 183, 184
BssMI GATC 2 cut(s) 272, 300
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 207
BstKTI GATC 2 cut(s) 275, 303
BstMAI GTCTC 2 cut(s) 8, 364
BstMBI GATC 2 cut(s) 272, 300
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 183, 184, 290
BstV2I GAAGAC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 207
Cfr13I GGNCC 2 cut(s) 180, 294
Cfr9I CCCGGG 1 cut(s) 184
Csp6I GTAC 1 cut(s) 29
CviAII CATG 2 cut(s) 298, 379
CviJI RGCY 3 cut(s) 85, 209, 278
CviKI_1 RGCY 3 cut(s) 85, 209, 278
CviQI GTAC 1 cut(s) 29
DpnI GATC 2 cut(s) 274, 302
DpnII GATC 2 cut(s) 272, 300
Ecl136II GAGCTC 1 cut(s) 85
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 364
Eco47I GGWCC 2 cut(s) 180, 294
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 85
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 2 cut(s) 301, 382
FaiI YATR 6 cut(s) 178, 299, 330, 346, 380, 393
FatI CATG 2 cut(s) 297, 378
FbaI TGATCA 1 cut(s) 300
FriOI GRGCYC 1 cut(s) 87
FspBI CTAG 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 56
HapII CCGG 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 2 cut(s) 301, 382
HinfI GANTC 3 cut(s) 89, 96, 372
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 40, 262
Hpy188I TCNGA 1 cut(s) 389
Hpy188III TCNNGA 2 cut(s) 93, 361
Hpy99I CGWCG 2 cut(s) 29, 39
HpyCH4IV ACGT 2 cut(s) 24, 34
HpyCH4V TGCA 2 cut(s) 60, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpySE526I ACGT 2 cut(s) 24, 34
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 2 cut(s) 301, 382
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 2 cut(s) 272, 300
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 9 cut(s) 86, 90, 177, 198, 223, 254, 264, 277, 304
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 24, 34
MaeIII GTNAC 1 cut(s) 66
MalI GATC 2 cut(s) 274, 302
MboI GATC 2 cut(s) 272, 300
MboII GAAGA 4 cut(s) 146, 162, 208, 367
MfeI CAATTG 2 cut(s) 260, 414
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 6 cut(s) 216, 255, 260, 340, 364, 414
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 7 cut(s) 13, 16, 109, 301, 304, 330, 349
MseI TTAA 2 cut(s) 111, 153
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 3 cut(s) 185, 186, 292
MunI CAATTG 2 cut(s) 260, 414
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 1 cut(s) 82
NciI CCSGG 2 cut(s) 185, 186
NdeII GATC 2 cut(s) 272, 300
NheI GCTAGC 1 cut(s) 205
NlaIII CATG 2 cut(s) 301, 382
NlaIV GGNNCC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 96, 372
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 180, 294
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 111, 153
Sau3AI GATC 2 cut(s) 272, 300
Sau96I GGNCC 2 cut(s) 180, 294
SchI GAGTC 1 cut(s) 83
ScrFI CCNGG 3 cut(s) 185, 186, 292
SduI GDGCHC 1 cut(s) 87
SetI ASST 9 cut(s) 8, 27, 37, 68, 87, 252, 280, 360, 439
SfaNI GCATC 1 cut(s) 223
SinI GGWCC 2 cut(s) 180, 294
SmaI CCCGGG 1 cut(s) 186
Sse9I AATT 6 cut(s) 216, 255, 260, 340, 364, 414
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 183, 184, 290
TaiI ACGT 2 cut(s) 27, 37
TaqI TCGA 3 cut(s) 8, 87, 362
TaqII GACCGA 1 cut(s) 26
TasI AATT 6 cut(s) 216, 255, 260, 340, 364, 414
TfiI GAWTC 2 cut(s) 96, 372
Tru1I TTAA 2 cut(s) 111, 153
Tru9I TTAA 2 cut(s) 111, 153
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 32
TspMI CCCGGG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 180, 294
XapI RAATTY 3 cut(s) 255, 340, 364
XmaI CCCGGG 1 cut(s) 184
XspI CTAG 1 cut(s) 206
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.