Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Reverse (-)

6267180 .. 6269842

Gene Structure 2663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGCGAGAAAACTTGCAAGGAGCTAAGAACGATTTTGGGAAAACTGAAGATGATTTGAAGTCACTTCAAAGTGTTGGTCAGATTATAGGGGAAGTTCTGAGACCTCTCGATTATGAACACTATACTGAATCTGGAAATGGCACACATCCACCCTTCACTTTAAAAAGTCCTATCTTTCTGAAGGCAGGGAAGAATGAAATTGCTCTACTCAGCATGACAGTTGGTCTGCAGTCCTATCAGACTTTGTTTCATGAGGGAGAGTGCTTTTTGCACATTGTCTCTTTACTAAATGGTAACCTTGATGATGCTAATGGAGAGACTTTGGTTCTGGGTGTCCTTCAAACTCTTACCTGTTTGCTTGCAAGCAATGACACATCAAAGCCTGAATTATCTGCGCTCGTAGAAGCCCTTGAACAGTGTGCTTGCAATCCTGATGTTTCTGTAGAGGTTGCTGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

154

Amino Acids

16.58

Weight (kDa)

4.52

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neurobeachin	PF20425	77 - 128	7.4e-23	Neurobeachin alpha solenoid region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	69, 203
AgsI	TTSAA	4 cut(s)	61, 71, 344, 416
AhdI	GACNNNNNGTC	1 cut(s)	225
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	3 cut(s)	97, 286, 314
ApeKI	GCWGC	1 cut(s)	455
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AspLEI	GCGC	1 cut(s)	400
BbvI	GCAGC	1 cut(s)	442
BcoDI	GTCTC	3 cut(s)	97, 286, 314
BfmI	CTRYAG	3 cut(s)	230, 444, 456
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmeRI	GACNNNNNGTC	1 cut(s)	225
BmsI	GCATC	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	97
Bse3DI	GCAATG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	92, 226
BseXI	GCAGC	1 cut(s)	442
BsmAI	GTCTC	3 cut(s)	97, 286, 314
Bso31I	GGTCTC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	93, 225
BspHI	TCATGA	1 cut(s)	253
BspMAI	CTGCAG	2 cut(s)	234, 460
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	376
Bst4CI	ACNGT	2 cut(s)	223, 420
BstC8I	GCNNGC	3 cut(s)	363, 367, 427
BstDEI	CTNAG	3 cut(s)	27, 101, 212
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	400
BstMAI	GTCTC	3 cut(s)	97, 286, 314
BstPI	GGTNACC	1 cut(s)	296
BstSFI	CTRYAG	3 cut(s)	230, 444, 456
BstV1I	GCAGC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	3 cut(s)	363, 367, 427
CciI	TCATGA	1 cut(s)	253
CfoI	GCGC	1 cut(s)	400
CviAII	CATG	2 cut(s)	217, 254
CviJI	RGCY	3 cut(s)	26, 385, 410
CviKI_1	RGCY	3 cut(s)	26, 385, 410
DdeI	CTNAG	3 cut(s)	27, 101, 212
DraI	TTTAAA	1 cut(s)	165
DriI	GACNNNNNGTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	69, 203
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
FaeI	CATG	2 cut(s)	220, 257
FaiI	YATR	5 cut(s)	89, 117, 126, 218, 255
FatI	CATG	2 cut(s)	216, 253
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	456
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	2 cut(s)	220, 257
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	1 cut(s)	131
Hpy188I	TCNGA	4 cut(s)	84, 102, 183, 243
Hpy188III	TCNNGA	4 cut(s)	110, 135, 254, 434
HpyAV	CCTTC	3 cut(s)	166, 178, 350
HpyCH4III	ACNGT	2 cut(s)	223, 420
HpyCH4V	TGCA	6 cut(s)	19, 232, 274, 365, 429, 458
HpyF3I	CTNAG	3 cut(s)	27, 101, 212
Hsp92II	CATG	2 cut(s)	220, 257
HspAI	GCGC	1 cut(s)	398
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	7 cut(s)	120, 174, 317, 367, 399, 444, 447
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	63, 296
MboII	GAAGA	2 cut(s)	62, 205
MluCI	AATT	2 cut(s)	201, 389
MnlI	CCTC	3 cut(s)	117, 250, 442
MseI	TTAA	1 cut(s)	164
NlaIII	CATG	2 cut(s)	220, 257
NmuCI	GTSAC	1 cut(s)	63
PagI	TCATGA	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	296
PstI	CTGCAG	2 cut(s)	234, 460
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	456
SetI	ASST	5 cut(s)	28, 109, 303, 356, 453
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	3 cut(s)	230, 444, 456
Sse9I	AATT	2 cut(s)	201, 389
TaaI	ACNGT	2 cut(s)	223, 420
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	201, 389
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	63
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	63
TspDTI	ATGAA	3 cut(s)	132, 213, 242
TspRI	CASTG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.