Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000882.1

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Forward (+)

58210 .. 58705

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000882.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgaccgcgaccgagacggaggacgtcgtacgacgttgcatcgccatcaccgattaccgcaagaggttactccaacacaaagagctcaactcccgagtcttgcgagaaaacttgcgaggagctaagaaggagtttgggaaaactgaagatgatttgaagtcgcttcaaagtgttggtcacattataggggaagttctaagacctcttgattatgaaaaccagtttaaaatgttgcactatttgaaatacagtgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

86

Amino Acids

10.17

Weight (kDa)

8.76

Isoelectric Point (pI)

60.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 58
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	157, 167, 244
AluBI	AGCT	2 cut(s)	85, 122
AluI	AGCT	2 cut(s)	85, 122
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	1 cut(s)	93
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BsaHI	GRCGYC	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	93
BsiWI	CGTACG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	8
BsmBI	CGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	6, 58
BspFNI	CGCG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	123, 197
BstFNI	CGCG	1 cut(s)	8
BstMAI	GTCTC	1 cut(s)	8
BstMCI	CGRYCG	1 cut(s)	12
BstUI	CGCG	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	29
CviJI	RGCY	2 cut(s)	85, 122
CviKI_1	RGCY	2 cut(s)	85, 122
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	123, 197
DraI	TTTAAA	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	1 cut(s)	8
FaiI	YATR	2 cut(s)	185, 213
FriOI	GRGCYC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	24
HinfI	GANTC	1 cut(s)	96
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	93, 206
Hpy99I	CGWCG	2 cut(s)	29, 36
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	2 cut(s)	24, 34
HpyCH4V	TGCA	2 cut(s)	39, 235
HpyF3I	CTNAG	2 cut(s)	123, 197
HpySE526I	ACGT	2 cut(s)	24, 34
Hsp92I	GRCGYC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	1 cut(s)	233
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	2 cut(s)	24, 34
MaeIII	GTNAC	2 cut(s)	66, 176
MboII	GAAGA	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	4 cut(s)	13, 57, 110, 213
MseI	TTAA	2 cut(s)	225, 259
MvnI	CGCG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
Pfl23II	CGTACG	1 cut(s)	28
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	87
PspLI	CGTACG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	225, 259
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	27, 37, 68, 87, 124, 205
SfaNI	GCATC	1 cut(s)	48
SsiI	CCGC	2 cut(s)	6, 58
SstI	GAGCTC	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	2 cut(s)	27, 37
TaqII	GACCGA	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	225, 259
Tru9I	TTAA	2 cut(s)	225, 259
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	228
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	256
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.