Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Reverse (-)

30134173 .. 30149130

Gene Structure 14958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG295100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGGACCTGAGTAACCAACCTAGGTTATTGCAAACCCAACTTTCCGAAATAAAGAAGAGATTAAGCTGTTGGACGAACCCTGATAAGATCAACAATGTAGATCAGTTGGGGCAAATGGAAGATTCAATTCGAGAATCACGTAACCAGATTCAAACACATAAGTGTTATGAACCTCTTCGGTGTTCTCAAGAGATACATGCACTAGTTGGAGAGGTTAGCAGACTTGTTGTTGCTGAAGCTTGCATACAGGCGCTGGACATAAAATGCACTGAAGGAAAAATATTTGAAGTCAACTCAGTTGAGGAACCAAAGGTGGTTGATCTTGCTCGATTCCTGACTAAAAGTGGGACCTCATCGGATGAGAGAAGTCTAGAACCTTCTGGACTTCCTCTTAACAATTTCCTTTATTGTAGGTCTGACATGAGAGATCGAGATCTAGTCCAGAAGCATCTTCCTTCCGCTCTTCTATTCCTCCCATCCGACAGAAACAAACCTCCAGAGGCTTCGTCCAATGACCTCGCCCATAAGCTAGCGTGGTTGCAAGAAGATGTCAACCAGCTACTCACAGAGCAGATGGAAGCAAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

207

Amino Acids

23.55

Weight (kDa)

5.22

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	494
AciI	CCGC	1 cut(s)	492
AcuI	CTGAAG	2 cut(s)	288, 324
AgsI	TTSAA	3 cut(s)	159, 185, 320
AhlI	ACTAGT	1 cut(s)	235
AleI	CACNNNNGTG	1 cut(s)	193
AluBI	AGCT	4 cut(s)	99, 272, 562, 592
AluI	AGCT	4 cut(s)	99, 272, 562, 592
AlwNI	CAGNNNCTG	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	207
AspA2I	CCTAGG	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	37, 381
AsuNHI	GCTAGC	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	37, 381
AvrII	CCTAGG	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
BccI	CCATC	2 cut(s)	517, 601
BclI	TGATCA	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	5 cut(s)	54, 236, 404, 470, 563
BfoI	RGCGCY	1 cut(s)	287
BglII	AGATCT	1 cut(s)	466
BlnI	CCTAGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	37, 381
BmgT120I	GGNCC	2 cut(s)	37, 381
BmiI	GGNNCC	2 cut(s)	339, 382
BmsI	GCATC	1 cut(s)	490
BmtI	GCTAGC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	513
BpuEI	CTTGAG	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	2 cut(s)	397, 509
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	32, 342
BseRI	GAGGAG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	394
Bsp143I	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
BspACI	CCGC	1 cut(s)	492
BspCNI	CTCAG	2 cut(s)	33, 341
BspLI	GGNNCC	2 cut(s)	339, 382
BspOI	GCTAGC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	501
BsrBI	CCGCTC	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
BssT1I	CCWWGG	1 cut(s)	53
Bst6I	CTCTTC	3 cut(s)	83, 213, 501
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	274, 564
BstDEI	CTNAG	2 cut(s)	41, 328
BstF5I	GGATG	2 cut(s)	397, 509
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	6 cut(s)	6, 123, 136, 355, 463, 469
BstMBI	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
BstNSI	RCATGY	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	397, 509
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	274, 564
CaiI	CAGNNNCTG	1 cut(s)	286
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	37, 381
CviAII	CATG	2 cut(s)	230, 454
CviJI	RGCY	5 cut(s)	99, 272, 536, 562, 592
CviKI_1	RGCY	5 cut(s)	99, 272, 536, 562, 592
DdeI	CTNAG	2 cut(s)	41, 328
DpnI	GATC	6 cut(s)	5, 122, 135, 354, 462, 468
DpnII	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
Eam1104I	CTCTTC	3 cut(s)	83, 213, 501
EarI	CTCTTC	3 cut(s)	83, 213, 501
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	37, 381
Eco57I	CTGAAG	2 cut(s)	288, 324
EcoO109I	RGGNCCY	2 cut(s)	37, 381
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	233, 457
FaiI	YATR	8 cut(s)	33, 192, 201, 231, 278, 293, 455, 558
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	2 cut(s)	229, 453
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	404, 496
FspBI	CTAG	5 cut(s)	54, 236, 404, 470, 563
GlaI	GCGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	287
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	233, 457
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	2 cut(s)	325, 586
HindII	GTYRAC	2 cut(s)	325, 586
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	4 cut(s)	155, 167, 181, 363
Hpy166II	GTNNAC	2 cut(s)	325, 586
Hpy188I	TCNGA	4 cut(s)	79, 391, 451, 514
Hpy188III	TCNNGA	8 cut(s)	164, 221, 367, 404, 414, 464, 475, 530
Hpy8I	GTNNAC	2 cut(s)	325, 586
HpyAV	CCTTC	3 cut(s)	299, 420, 498
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	64, 233, 276, 300, 574
HpyF3I	CTNAG	2 cut(s)	41, 328
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	2 cut(s)	233, 457
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
LguI	GCTCTTC	1 cut(s)	501
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	5 cut(s)	54, 236, 404, 470, 563
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	2 cut(s)	44, 173
MalI	GATC	6 cut(s)	5, 122, 135, 354, 462, 468
MbiI	CCGCTC	1 cut(s)	494
MboI	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
MboII	GAAGA	6 cut(s)	100, 164, 200, 476, 488, 590
MfeI	CAATTG	1 cut(s)	619
MflI	RGATCY	1 cut(s)	466
MluCI	AATT	3 cut(s)	159, 430, 619
MmeI	TCCRAC	3 cut(s)	83, 220, 537
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	2 cut(s)	95, 426
MslI	CAYNNNNRTG	1 cut(s)	193
MunI	CAATTG	1 cut(s)	619
NdeII	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
NheI	GCTAGC	1 cut(s)	562
NlaIII	CATG	2 cut(s)	233, 457
NlaIV	GGNNCC	2 cut(s)	339, 382
NspI	RCATGY	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	193
PciSI	GCTCTTC	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	4 cut(s)	155, 167, 181, 363
Ppu21I	YACGTR	1 cut(s)	173
PpuMI	RGGWCCY	2 cut(s)	37, 381
Psp5II	RGGWCCY	2 cut(s)	37, 381
PspN4I	GGNNCC	2 cut(s)	339, 382
PspPI	GGNCC	2 cut(s)	37, 381
PspPPI	RGGWCCY	2 cut(s)	37, 381
PstNI	CAGNNNCTG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	95, 426
Sau3AI	GATC	6 cut(s)	3, 120, 133, 352, 460, 466
Sau96I	GGNCC	2 cut(s)	37, 381
SfaNI	GCATC	1 cut(s)	490
SinI	GGWCC	2 cut(s)	37, 381
SmiMI	CAYNNNNRTG	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	3 cut(s)	159, 430, 619
SsiI	CCGC	1 cut(s)	492
SspI	AATATT	1 cut(s)	315
SspMI	CTAG	5 cut(s)	54, 236, 404, 470, 563
StyI	CCWWGG	1 cut(s)	53
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	3 cut(s)	163, 361, 463
TasI	AATT	3 cut(s)	159, 430, 619
TfiI	GAWTC	4 cut(s)	155, 167, 181, 363
Tru1I	TTAA	2 cut(s)	95, 426
Tru9I	TTAA	2 cut(s)	95, 426
TscAI	CASTG	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	15, 216
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	37, 381
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	5 cut(s)	54, 236, 404, 470, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.