Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Reverse (-)

51877134 .. 51877581

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 229 bp

ATGACCTCGACCGAGAATGAGGACGCTGTACGACGTCGCACCACCATCAACGATTACCTAAAGAGGTTACTCCAGCACAAGGAGCTCCGAGTTCGCGCATGTTTTGCGGTGCGAGGAAACTTGCGAGGAGCTAAGATGGATTTTGGGAAAACTAAAGATGATTTGAAGTCACTTCAAAGTATTGGTCAGATTATTGGGGAATTTCTGAGACCTCTTGATTATGAACACT

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

76

Amino Acids

8.87

Weight (kDa)

9.57

Isoelectric Point (pI)

59.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AccII	CGCG	1 cut(s)	96
AciI	CCGC	1 cut(s)	107
AcsI	RAATTY	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	34
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	166, 176
AluBI	AGCT	2 cut(s)	85, 131
AluI	AGCT	2 cut(s)	85, 131
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspLEI	GCGC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BccI	CCATC	2 cut(s)	53, 130
BcoDI	GTCTC	1 cut(s)	202
BpmI	CTGGAG	1 cut(s)	56
BsaHI	GRCGYC	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	202
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	87
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	34
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstDEI	CTNAG	2 cut(s)	132, 206
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	202
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 104
BstNSI	RCATGY	1 cut(s)	102
BstUI	CGCG	1 cut(s)	96
CfoI	GCGC	1 cut(s)	98
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	2 cut(s)	85, 131
CviKI_1	RGCY	2 cut(s)	85, 131
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	132, 206
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	1 cut(s)	102
FaiI	YATR	2 cut(s)	100, 222
FatI	CATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	87
GlaI	GCGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
Hpy188I	TCNGA	3 cut(s)	89, 189, 207
Hpy188III	TCNNGA	1 cut(s)	215
Hpy99I	CGWCG	2 cut(s)	36, 39
HpyCH4IV	ACGT	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 104
HpyF3I	CTNAG	2 cut(s)	132, 206
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	96
LmnI	GCTCC	3 cut(s)	82, 90, 128
LpnPI	CCDG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	2 cut(s)	66, 168
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	1 cut(s)	200
MnlI	CCTC	6 cut(s)	13, 16, 57, 107, 119, 222
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	82, 104
NlaIII	CATG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	87
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	8, 37, 60, 68, 87, 133, 214
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	87
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	8
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	200
TseFI	GTSAC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	168
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	102
ZraI	GACGTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.