Rh5AG312800

BEACH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005939
Physical Location & Seq
Reverse (-)
45235429 .. 45237825
2397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG312800.1

Sequence Viewer

Length: 336 bp
ATGGCGACCCTTCCATCCACCCATTGCTGCCGTACTTACTCCTCCTCATCATCGGCGTCGTATTCTTCCGTACACAGAAGCCTCCAGAGGGTGGCCGTTTCTCCGAGTCCGCAATGTTTCGTCTCCGCCAAGTCCTATCAGACTTTGTTTCATGAGGGAGAGTGCTTTTTGCACATTGTCTCTTTACTAAATGGTAACCTTGATGATGCTAATGGAGAGACTCTGGTTCTGGGTGTCCTTCAAACTCTTACCTGTTTGCTTGCAAGCAATGACACATCAAAGTTAATACACACTCATACACAGATGAACCGGTTTACAGCTGAAGTGGTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

111

Amino Acids

12.08

Weight (kDa)

6.56

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurobeachin PF20425 44 - 95 2.7e-23 Neurobeachin alpha solenoid region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AciI CCGC 2 cut(s) 110, 126
AcoI YGGCCR 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 34, 72
AfiI CCNNNNNNNGG 2 cut(s) 88, 91
AgeI ACCGGT 1 cut(s) 309
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Alw26I GTCTC 3 cut(s) 127, 184, 212
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 27
AsiGI ACCGGT 1 cut(s) 309
BbvI GCAGC 1 cut(s) 14
BccI CCATC 1 cut(s) 22
BceAI ACGGC 2 cut(s) 15, 80
BcoDI GTCTC 3 cut(s) 127, 184, 212
BfaI CTAG 1 cut(s) 334
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 91
Bse118I RCCGGY 1 cut(s) 309
Bse3DI GCAATG 3 cut(s) 22, 119, 274
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 88, 91
BseMI GCAATG 3 cut(s) 22, 119, 274
BseRI GAGGAG 2 cut(s) 31, 34
BseXI GCAGC 1 cut(s) 14
BshFI GGCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 309
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 88, 91
BsmAI GTCTC 3 cut(s) 127, 184, 212
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 1 cut(s) 95
BspACI CCGC 2 cut(s) 110, 126
BspANI GGCC 1 cut(s) 95
BspHI TCATGA 1 cut(s) 151
BsrDI GCAATG 3 cut(s) 22, 119, 274
BsrFI RCCGGY 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 2 cut(s) 261, 265
BstEII GGTNACC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 14
BstMAI GTCTC 3 cut(s) 127, 184, 212
BstPI GGTNACC 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 14
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 261, 265
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 309
CseI GACGC 1 cut(s) 45
Csp6I GTAC 2 cut(s) 33, 71
CspAI ACCGGT 1 cut(s) 309
CviAII CATG 1 cut(s) 152
CviJI RGCY 3 cut(s) 81, 95, 320
CviKI_1 RGCY 3 cut(s) 81, 95, 320
CviQI GTAC 2 cut(s) 33, 71
EaeI YGGCCR 1 cut(s) 93
EciI GGCGGA 1 cut(s) 115
Eco91I GGTNACC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 1 cut(s) 155
FaiI YATR 2 cut(s) 153, 297
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 334
GluI GCNGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 310
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 155
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 2 cut(s) 106, 220
HpaII CCGG 1 cut(s) 310
Hpy166II GTNNAC 3 cut(s) 73, 315, 331
Hpy188I TCNGA 2 cut(s) 105, 141
Hpy188III TCNNGA 2 cut(s) 85, 152
Hpy8I GTNNAC 3 cut(s) 73, 315, 331
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 20, 248
HpyCH4V TGCA 2 cut(s) 172, 263
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 155
LpnPI CCDG 5 cut(s) 98, 209, 215, 265, 323
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 1 cut(s) 57
MlyI GAGTC 2 cut(s) 115, 214
MnlI CCTC 5 cut(s) 52, 55, 81, 92, 148
MseI TTAA 1 cut(s) 284
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 1 cut(s) 310
NlaIII CATG 1 cut(s) 155
PagI TCATGA 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 91
PinAI ACCGGT 1 cut(s) 309
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 2 cut(s) 114, 214
PpsI GAGTC 2 cut(s) 114, 214
PspEI GGTNACC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 2 cut(s) 34, 72
RsaNI GTAC 2 cut(s) 33, 71
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 28
SchI GAGTC 2 cut(s) 115, 214
SetI ASST 3 cut(s) 201, 254, 322
SfaNI GCATC 1 cut(s) 196
SsiI CCGC 2 cut(s) 110, 126
SspMI CTAG 1 cut(s) 334
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 140, 320
TspGWI ACGGA 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 91
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.