Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Reverse (-)

15250947 .. 15253927

Gene Structure 2981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001409

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAAACTTGCAGTGAATGTAATTTTGTTAGAGCTGCTTTGTGTTTGAGAAGTCTGGAAGTAAGTATTTTGGATATAACTAGTCTGACTATCATGAGGGCTCTTCCAAAAGAGGTTGACCTGGTAGTATATAATATGCTTCATGAAGATCTAGTTAATGTGAGAATTCAATTGGGTCAGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGTATCAAGTTGCTCAAGGCATATATGGTCACAAAGATGCAGCAACAGAACATGAATCTTTATCATGTACAAAGGTTATGATTGAAGATATTGGGAAGAAGATTAAGCAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

119

Amino Acids

13.14

Weight (kDa)

5.89

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	170, 326
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	120, 200
AluBI	AGCT	2 cut(s)	35, 188
AluI	AGCT	2 cut(s)	35, 188
AlwI	GGATC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	35, 281
ApoI	RAATTY	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	204
AvaII	GGWCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	22, 293
BciT130I	CCWGG	2 cut(s)	122, 202
BclI	TGATCA	1 cut(s)	210
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	2 cut(s)	81, 152
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	2 cut(s)	36, 282
BlsI	GCNGC	2 cut(s)	37, 283
Bme1390I	CCNGG	2 cut(s)	122, 202
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	204
BmrFI	CCNGG	2 cut(s)	122, 202
BmsI	GCATC	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	122, 202
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	22, 293
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	3 cut(s)	148, 182, 210
BspHI	TCATGA	2 cut(s)	93, 142
BspPI	GGATC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	308
BssMI	GATC	3 cut(s)	148, 182, 210
Bst2UI	CCWGG	2 cut(s)	122, 202
Bst6I	CTCTTC	1 cut(s)	108
BstAUI	TGTACA	1 cut(s)	308
BstKTI	GATC	3 cut(s)	151, 185, 213
BstMBI	GATC	3 cut(s)	148, 182, 210
BstNI	CCWGG	2 cut(s)	122, 202
BstSCI	CCNGG	2 cut(s)	120, 200
BstV1I	GCAGC	2 cut(s)	22, 293
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
CciI	TCATGA	2 cut(s)	93, 142
Cfr13I	GGNCC	1 cut(s)	204
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	5 cut(s)	94, 143, 208, 293, 306
CviJI	RGCY	3 cut(s)	35, 101, 188
CviKI_1	RGCY	3 cut(s)	35, 101, 188
CviQI	GTAC	1 cut(s)	309
DpnI	GATC	3 cut(s)	150, 184, 212
DpnII	GATC	3 cut(s)	148, 182, 210
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	120, 200
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	5 cut(s)	97, 146, 211, 296, 309
FatI	CATG	5 cut(s)	93, 142, 207, 292, 305
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	36, 282
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	36, 282
FspBI	CTAG	2 cut(s)	81, 152
GluI	GCNGC	2 cut(s)	36, 282
Hin1II	CATG	5 cut(s)	97, 146, 211, 296, 309
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	56, 94, 143
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4V	TGCA	2 cut(s)	12, 281
Hsp92II	CATG	5 cut(s)	97, 146, 211, 296, 309
Ksp22I	TGATCA	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	148, 182, 210
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	41, 107, 134, 164, 174, 187, 214
Lsp1109I	GCAGC	2 cut(s)	22, 293
LweI	GCATC	1 cut(s)	268
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	2 cut(s)	81, 152
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	150, 184, 212
MboI	GATC	3 cut(s)	148, 182, 210
MboII	GAAGA	5 cut(s)	95, 158, 338, 349, 352
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	3 cut(s)	22, 165, 170
MnlI	CCTC	4 cut(s)	90, 106, 211, 214
MseI	TTAA	2 cut(s)	156, 345
MslI	CAYNNNNRTG	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	122, 202
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	2 cut(s)	122, 202
NdeII	GATC	3 cut(s)	148, 182, 210
NlaIII	CATG	5 cut(s)	97, 146, 211, 296, 309
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	2 cut(s)	93, 142
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	37, 283
Psp6I	CCWGG	2 cut(s)	120, 200
PspGI	CCWGG	2 cut(s)	120, 200
PspPI	GGNCC	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	276
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	156, 345
SatI	GCNGC	2 cut(s)	36, 282
Sau3AI	GATC	3 cut(s)	148, 182, 210
Sau96I	GGNCC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	122, 202
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	5 cut(s)	37, 117, 123, 190, 318
SexAI	ACCWGGT	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	3 cut(s)	22, 165, 170
SspMI	CTAG	2 cut(s)	81, 152
StyD4I	CCNGG	2 cut(s)	120, 200
TasI	AATT	3 cut(s)	22, 165, 170
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	156, 345
Tru9I	TTAA	2 cut(s)	156, 345
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	35, 281
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	131, 159, 222, 309
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	165
XspI	CTAG	2 cut(s)	81, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.