Rh2BG482000

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005939
Physical Location & Seq
Forward (+)
68158664 .. 68171990
13327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG482000.1

Sequence Viewer

Length: 228 bp
ATGATGTCAACAGAGACGGCCGACGCCGTACGTCGTCGCACCACCATCACCGATTACCGCAAGAGGTTACTCCAGCACAAGGAGCTCGATTCCCGAGACCGCGCAGCTATCCTCAACGATAACACGCCTAATCAGTTACGAGTTGCTGGTGAAGCTCAAGTTTGTTGTAGCCTAATCAGTACACGTGGATTCTTTAGACTCAATTTTGCTCAGTTTTCATTTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

75

Amino Acids

8.71

Weight (kDa)

10.25

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 102
AciI CCGC 2 cut(s) 58, 100
AcoI YGGCCR 1 cut(s) 18
AcvI CACGTG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 30, 181
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 182
AluBI AGCT 3 cut(s) 85, 107, 155
AluI AGCT 3 cut(s) 85, 107, 155
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 8, 90
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 40, 161
AvaI CYCGRG 1 cut(s) 93
BanII GRGCYC 1 cut(s) 87
BbrPI CACGTG 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 53
BceAI ACGGC 2 cut(s) 11, 33
BcoDI GTCTC 2 cut(s) 8, 90
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 224
BseX3I CGGCCG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 93
BsiWI CGTACG 1 cut(s) 28
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 2 cut(s) 8, 90
BsmBI CGTCTC 1 cut(s) 8
BsnI GGCC 1 cut(s) 20
Bso31I GGTCTC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 87
BspACI CCGC 2 cut(s) 58, 100
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 102
BspTNI GGTCTC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 24
BstACI GRCGYC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 185
BstDEI CTNAG 1 cut(s) 210
BstFNI CGCG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 8, 90
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 82, 152
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 116
BstZI CGGCCG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 20
CfoI GCGC 1 cut(s) 104
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 29, 180
CviJI RGCY 5 cut(s) 20, 85, 107, 155, 171
CviKI_1 RGCY 5 cut(s) 20, 85, 107, 155, 171
CviQI GTAC 2 cut(s) 29, 180
DdeI CTNAG 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 18
EagI CGGCCG 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 90
Eco52I CGGCCG 1 cut(s) 18
Eco53kI GAGCTC 1 cut(s) 85
Eco72I CACGTG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 105
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 105
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 20
HgaI GACGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 24
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 89, 189, 198
HphI GGTGA 2 cut(s) 40, 161
Hpy166II GTNNAC 2 cut(s) 9, 182
Hpy188III TCNNGA 1 cut(s) 93
Hpy8I GTNNAC 2 cut(s) 9, 182
Hpy99I CGWCG 3 cut(s) 26, 36, 39
HpyCH4IV ACGT 2 cut(s) 31, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 152
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 2 cut(s) 31, 184
Hsp92I GRCGYC 1 cut(s) 24
HspAI GCGC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 86, 132
Lsp1109I GCAGC 1 cut(s) 116
MaeII ACGT 2 cut(s) 31, 184
MaeIII GTNAC 2 cut(s) 66, 135
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 1 cut(s) 202
MlyI GAGTC 1 cut(s) 192
MnlI CCTC 2 cut(s) 57, 122
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 82, 152
PfeI GAWTC 2 cut(s) 89, 189
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 192
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 87
PspCI CACGTG 1 cut(s) 185
PspLI CGTACG 1 cut(s) 28
RsaI GTAC 2 cut(s) 30, 181
RsaNI GTAC 2 cut(s) 29, 180
SacI GAGCTC 1 cut(s) 87
SatI GCNGC 1 cut(s) 105
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 87
SetI ASST 7 cut(s) 34, 68, 87, 109, 157, 187, 227
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 1 cut(s) 202
SsiI CCGC 2 cut(s) 58, 100
SstI GAGCTC 1 cut(s) 87
TaiI ACGT 2 cut(s) 34, 187
TaqI TCGA 1 cut(s) 87
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 2 cut(s) 89, 189
TseI GCWGC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.