Rh7CG257600

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005939
Physical Location & Seq
Forward (+)
25061825 .. 25073474
11650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG257600.1

Sequence Viewer

Length: 327 bp
ATGATGACGGCGACCGAGAGAGAGGACGCGGTACGACGTAGCACCACCTTCACCGATTACCGCAAGAGGTCACTCCAACACAAGGAGCTCGACTCCCGAGTTCGCGCAGGCAGTGGGTTTCTTGGCTGTCGCAGTAAAGTGGACAAAGAAAAACCAACAGCAGGCGCTCAAGTATTTGAGCAATTATGGTTCCAGGGTAGTGGTAAACAATTCTGTGGAATGGATGCTAAGGAGGTTGCCAATTTCAAGCCTGAGATGATACATGCATCCTCACCTGGAATCATGGCTGCTATTGATAGTGTATCAAAGGCTTCTCAAGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

9.03

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 29, 105
AciI CCGC 2 cut(s) 29, 61
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 82, 161
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 2 cut(s) 192, 274
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
Alw21I GWGCWC 1 cut(s) 90
Ama87I CYCGRG 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 287
AspLEI GCGC 2 cut(s) 107, 167
AsuHPI GGTGA 2 cut(s) 43, 264
AvaI CYCGRG 1 cut(s) 96
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 2 cut(s) 194, 276
BfoI RGCGCY 1 cut(s) 168
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 194, 276
BmeT110I CYCGRG 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 194, 276
BmsI GCATC 2 cut(s) 214, 275
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 2 cut(s) 153, 300
BsaJI CCNNGG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 161
BseBI CCWGG 2 cut(s) 194, 276
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 229, 266
BseLI CCNNNNNNNGG 2 cut(s) 82, 161
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 274
Bsh1236I CGCG 2 cut(s) 29, 105
Bsh1285I CGRYCG 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 82, 161
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 90
BspACI CCGC 2 cut(s) 29, 61
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 2 cut(s) 29, 105
BspLI GGNNCC 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 194, 276
BstC8I GCNNGC 2 cut(s) 109, 163
BstDEI CTNAG 2 cut(s) 228, 252
BstF5I GGATG 2 cut(s) 229, 266
BstFNI CGCG 2 cut(s) 29, 105
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 2 cut(s) 107, 167
BstMCI CGRYCG 1 cut(s) 15
BstNI CCWGG 2 cut(s) 194, 276
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 2 cut(s) 192, 274
BstUI CGCG 2 cut(s) 29, 105
BstV1I GCAGC 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 229, 266
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 2 cut(s) 109, 163
CfoI GCGC 2 cut(s) 107, 167
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 263, 283
CviJI RGCY 5 cut(s) 88, 126, 250, 287, 311
CviKI_1 RGCY 5 cut(s) 88, 126, 250, 287, 311
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 228, 252
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 192, 274
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 2 cut(s) 266, 286
FaiI YATR 3 cut(s) 187, 264, 284
FatI CATG 2 cut(s) 262, 282
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 236, 253
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 288
GlaI GCGC 2 cut(s) 106, 166
GluI GCNGC 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 168
HgaI GACGC 1 cut(s) 35
HhaI GCGC 2 cut(s) 107, 167
Hin1II CATG 2 cut(s) 266, 286
Hin6I GCGC 2 cut(s) 105, 165
HinP1I GCGC 2 cut(s) 105, 165
HinfI GANTC 2 cut(s) 92, 279
HphI GGTGA 2 cut(s) 43, 264
Hpy166II GTNNAC 2 cut(s) 142, 206
Hpy188III TCNNGA 2 cut(s) 96, 317
Hpy8I GTNNAC 2 cut(s) 142, 206
Hpy99I CGWCG 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 266
HpyF3I CTNAG 2 cut(s) 228, 252
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 2 cut(s) 266, 286
HspAI GCGC 2 cut(s) 105, 165
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 7 cut(s) 93, 147, 179, 206, 261, 264, 288
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 2 cut(s) 214, 275
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 69
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 4 cut(s) 182, 209, 241, 322
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 16, 60, 226, 280
Mph1103I ATGCAT 1 cut(s) 268
MspR9I CCNGG 2 cut(s) 194, 276
MvaI CCWGG 2 cut(s) 194, 276
MvnI CGCG 2 cut(s) 29, 105
NlaIII CATG 2 cut(s) 266, 286
NlaIV GGNNCC 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 266
PfeI GAWTC 1 cut(s) 279
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 192, 274
PspGI CCWGG 2 cut(s) 192, 274
PspN4I GGNNCC 1 cut(s) 191
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SacI GAGCTC 1 cut(s) 90
SatI GCNGC 1 cut(s) 288
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 194, 276
SduI GDGCHC 1 cut(s) 90
SetI ASST 6 cut(s) 40, 50, 71, 90, 237, 277
SfaNI GCATC 2 cut(s) 214, 275
SmlI CTYRAG 2 cut(s) 168, 315
SmoI CTYRAG 2 cut(s) 168, 315
Sse9I AATT 4 cut(s) 182, 209, 241, 322
SsiI CCGC 2 cut(s) 29, 61
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 192, 274
TaiI ACGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 90
TaqII GACCGA 1 cut(s) 29
TasI AATT 4 cut(s) 182, 209, 241, 322
TfiI GAWTC 1 cut(s) 279
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 69
TspRI CASTG 1 cut(s) 118
XceI RCATGY 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.