Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008931.1

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Forward (+)

8613 .. 10528

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008931.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggtagcggtgaatgtggttattattacagctgtaaatgcaacgatcaatgcagcattcaacacggcaatcattgtcgccaataagtggcagttatttcgactcaacaccatcacaatccccatagcagatctaccttctccgaatcgtgaacgttttctcagatccaaagctttctttaagcccttcatcaatggcaaagcctccggtatgctcgctacctacgtcatcctagccatcgatatgatcaaggtgagaattcaattgggtcagggatcagctggacaagttgccaggaccatgatcaaggaggagggttttggttcattgtataaggcaagcttatttggtgtgaatacagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

121

Amino Acids

13.16

Weight (kDa)

10.49

Isoelectric Point (pI)

19.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	87
AciI	CCGC	1 cut(s)	8
AclI	AACGTT	1 cut(s)	154
AclWI	GGATC	2 cut(s)	159, 283
AcsI	RAATTY	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	61, 263
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	4 cut(s)	32, 173, 281, 342
AluI	AGCT	4 cut(s)	32, 173, 281, 342
AlwI	GGATC	2 cut(s)	159, 283
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	22, 265
AvaII	GGWCC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	2 cut(s)	119, 245
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciT130I	CCWGG	1 cut(s)	295
BclI	TGATCA	2 cut(s)	246, 303
BfaI	CTAG	1 cut(s)	233
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	295
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	295
BseCI	ATCGAT	1 cut(s)	240
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	65
BshVI	ATCGAT	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	56
Bsp143I	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
BspACI	CCGC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	240
BspPI	GGATC	2 cut(s)	159, 283
BssMI	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	216, 340
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	228
BstKTI	GATC	6 cut(s)	48, 133, 167, 249, 278, 306
BstMBI	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	2 cut(s)	130, 164
BstYI	RGATCY	2 cut(s)	130, 164
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	216, 340
Cfr13I	GGNCC	1 cut(s)	297
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	32, 173, 184, 203, 236, 281, 342
CviKI_1	RGCY	7 cut(s)	32, 173, 184, 203, 236, 281, 342
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	6 cut(s)	47, 132, 166, 248, 277, 305
DpnII	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
Eco47I	GGWCC	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	293
FaeI	CATG	1 cut(s)	304
FaiI	YATR	5 cut(s)	125, 212, 245, 302, 333
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	1 cut(s)	300
FbaI	TGATCA	2 cut(s)	246, 303
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	171, 340
HinfI	GANTC	2 cut(s)	102, 145
HpaII	CCGG	1 cut(s)	207
HphI	GGTGA	2 cut(s)	22, 265
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	144, 164
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	147, 196
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	154, 225
HpyCH4V	TGCA	2 cut(s)	41, 53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	2 cut(s)	154, 225
Hsp92II	CATG	1 cut(s)	304
Ksp22I	TGATCA	2 cut(s)	246, 303
Kzo9I	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
LpnPI	CCDG	5 cut(s)	220, 257, 267, 280, 307
Lsp1109I	GCAGC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	2 cut(s)	154, 225
MalI	GATC	6 cut(s)	47, 132, 166, 248, 277, 305
MboI	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	2 cut(s)	130, 164
MluCI	AATT	2 cut(s)	258, 263
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	214, 304, 307
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	2 cut(s)	32, 281
MspI	CCGG	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	295
MunI	CAATTG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
NlaIII	CATG	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	297
PsuI	RGATCY	2 cut(s)	130, 164
PvuII	CAGCTG	2 cut(s)	32, 281
RseI	CAYNNNNRTG	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	6 cut(s)	45, 130, 164, 246, 275, 303
Sau96I	GGNCC	1 cut(s)	297
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	1 cut(s)	295
SetI	ASST	9 cut(s)	34, 139, 157, 175, 224, 228, 255, 283, 344
SinI	GGWCC	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	258, 263
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	157, 228
TaqI	TCGA	2 cut(s)	100, 240
TasI	AATT	2 cut(s)	258, 263
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	178, 315
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	297
XapI	RAATTY	1 cut(s)	258
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.