Rmu_sc0005529.1_g000010

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005529.1
OG0005939
Physical Location & Seq
Reverse (-)
64171 .. 67099
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005529.1_g000010.1.cds

Sequence Viewer

Length: 336 bp
atgattgttggatttccaacctatcgatatgatgaaggtgagtggctcgcactgatgttgcgtgtggctcgcatctcaactatttctggtatgcttgctacctgcgtcatccaacctatcgatatgatgaaggtgagaattcaattggatcagggatcagctggacaagttgccaggaccatgatcaagaaggagggttttggttcattgtataaggaacagatctggaaggcgttccttgtgggtggtgcgccgattgtggtgccaccgaggttgaccgaagatggcggtgggccgaggatgttggagtgcagtgatgtggtggtgaattggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

7.76

Isoelectric Point (pI)

22.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 262
AciI CCGC 1 cut(s) 288
AclWI GGATC 2 cut(s) 156, 163
AcsI RAATTY 1 cut(s) 138
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AlwI GGATC 2 cut(s) 156, 163
AoxI GGCC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 177, 293
AsuHPI GGTGA 2 cut(s) 50, 145
AvaII GGWCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 262
BccI CCATC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 175
BclI TGATCA 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 177, 293
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 81
Bsa29I ATCGAT 2 cut(s) 25, 120
BsaJI CCNNGG 2 cut(s) 269, 296
BseBI CCWGG 1 cut(s) 175
BseCI ATCGAT 2 cut(s) 25, 120
BseDI CCNNGG 2 cut(s) 269, 296
BseGI GGATG 2 cut(s) 108, 306
BsgI GTGCAG 1 cut(s) 331
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 262
BshVI ATCGAT 2 cut(s) 25, 120
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 4 cut(s) 148, 155, 183, 222
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 295
BspDI ATCGAT 2 cut(s) 25, 120
BspLI GGNNCC 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 110
BspPI GGATC 2 cut(s) 156, 163
BspT107I GGYRCC 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 269, 296
BssMI GATC 4 cut(s) 148, 155, 183, 222
Bst2UI CCWGG 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 48, 70, 96
BstF5I GGATG 2 cut(s) 108, 306
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 4 cut(s) 151, 158, 186, 225
BstMBI GATC 4 cut(s) 148, 155, 183, 222
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 222
BstYI RGATCY 1 cut(s) 222
Bsu15I ATCGAT 2 cut(s) 25, 120
BsuRI GGCC 1 cut(s) 295
BsuTUI ATCGAT 2 cut(s) 25, 120
BtsCI GGATG 2 cut(s) 108, 306
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 2 cut(s) 50, 319
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 48, 70, 96
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 177, 293
ClaI ATCGAT 2 cut(s) 25, 120
CseI GACGC 1 cut(s) 94
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 1 cut(s) 181
CviJI RGCY 4 cut(s) 46, 68, 161, 295
CviKI_1 RGCY 4 cut(s) 46, 68, 161, 295
DpnI GATC 4 cut(s) 150, 157, 185, 224
DpnII GATC 4 cut(s) 148, 155, 183, 222
Eco47I GGWCC 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 173
FaeI CATG 1 cut(s) 184
FaiI YATR 5 cut(s) 30, 92, 125, 182, 213
FatI CATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 183
FokI GGATG 2 cut(s) 95, 313
GlaI GCGC 1 cut(s) 252
HaeIII GGCC 1 cut(s) 295
HgaI GACGC 1 cut(s) 94
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HphI GGTGA 2 cut(s) 50, 145
Hpy166II GTNNAC 1 cut(s) 276
Hpy188III TCNNGA 2 cut(s) 187, 226
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 4 cut(s) 29, 124, 184, 223
HpyCH4V TGCA 1 cut(s) 312
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 4 cut(s) 148, 155, 183, 222
LpnPI CCDG 7 cut(s) 72, 115, 137, 147, 160, 187, 211
LweI GCATC 1 cut(s) 81
MalI GATC 4 cut(s) 150, 157, 185, 224
MboI GATC 4 cut(s) 148, 155, 183, 222
MboII GAAGA 1 cut(s) 293
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 222
MluCI AATT 3 cut(s) 138, 143, 328
MmeI TCCRAC 3 cut(s) 41, 136, 285
MnlI CCTC 3 cut(s) 187, 264, 291
MroXI GAANNNNTTC 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 175
MunI CAATTG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 175
NdeII GATC 4 cut(s) 148, 155, 183, 222
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 177, 293
PsuI RGATCY 1 cut(s) 222
PvuII CAGCTG 1 cut(s) 161
Sau3AI GATC 4 cut(s) 148, 155, 183, 222
Sau96I GGNCC 2 cut(s) 177, 293
ScrFI CCNGG 1 cut(s) 175
SetI ASST 7 cut(s) 23, 40, 104, 118, 135, 163, 275
SfaNI GCATC 1 cut(s) 81
SinI GGWCC 1 cut(s) 177
Sse9I AATT 3 cut(s) 138, 143, 328
SsiI CCGC 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 173
TaqI TCGA 2 cut(s) 25, 120
TaqII GACCGA 1 cut(s) 293
TasI AATT 3 cut(s) 138, 143, 328
TscAI CASTG 2 cut(s) 57, 319
TspDTI ATGAA 3 cut(s) 48, 143, 195
TspRI CASTG 2 cut(s) 57, 319
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.