Rroxscaffold_6G00406150

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005939
Physical Location & Seq
Forward (+)
28575611 .. 28578105
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406150.1

Sequence Viewer

Length: 678 bp
ATGACCTCAACCAAGATGGTGGACGCCGCACGACATCGCACGCCATCACCGATTACTGCAATAGGTTTTGCATTGCAAGAAAACTTGCAAGGAGCTAAGGAGGAGTTTGGAAAAACTGAAGATGATTTGAAGTCGCTTCAAAGTGTTGGTCAGATTATAGGGAAAGTTATGAAACCTCTCGATAATGAATGTTCTGCTTTGTGTTTGAGAAGTTTGGAAGTAAATATTTTGGATATGACTAGTCCGACTATCATGAGGGCTCTTCCAAGAGAGGTTGACCTGGTATTGTATAATATGCTTCATGAAAATCCAGTTAATTGTGTTCTTCTCTATGGACCCCCGGGAATAGGGAAGACATTGCTAGCCAGAGCAATTTTAAGCAAGAGAGATGCTAACTTTCTAAAGGTGAGAATTCAATTGGGTCAGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGAAATTCAAAGTTGTTATACAGGATGGTTCCACTTGAATCTTATTTTTCAATGAATAATGTTGAGCGTCTACTCTTGTTTTGGGTGTATCAAGTTGCTCAAGGCATATATGATCATAAAGATGCAGCAACAGAACATGAATTGACAGGACCCGCCCCGTATTTCACCTTGAAATCCAAAGTGGCCATGCGGGGTCTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

225

Amino Acids

25.0

Weight (kDa)

8.7

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 108 - 138 1.2e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 544, 670
AciI CCGC 3 cut(s) 27, 627, 664
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 411, 478
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 7 cut(s) 130, 140, 416, 483, 512, 525, 646
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 2 cut(s) 279, 446
AluBI AGCT 2 cut(s) 95, 434
AluI AGCT 2 cut(s) 95, 434
AlwI GGATC 1 cut(s) 436
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 2 cut(s) 411, 478
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AspS9I GGNCC 3 cut(s) 335, 450, 623
AsuC2I CCSGG 2 cut(s) 341, 342
AsuHPI GGTGA 3 cut(s) 39, 418, 631
AsuNHI GCTAGC 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 3 cut(s) 335, 450, 623
BalI TGGCCA 1 cut(s) 659
BanII GRGCYC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 611
BccI CCATC 3 cut(s) 10, 52, 493
BciT130I CCWGG 2 cut(s) 281, 448
BclI TGATCA 2 cut(s) 456, 586
BcnI CCSGG 2 cut(s) 341, 342
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 2 cut(s) 240, 362
BisI GCNGC 2 cut(s) 27, 600
BlsI GCNGC 2 cut(s) 28, 601
Bme1390I CCNGG 4 cut(s) 281, 341, 342, 448
Bme18I GGWCC 3 cut(s) 335, 450, 623
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 335, 450, 623
BmiI GGNNCC 3 cut(s) 337, 504, 625
BmrFI CCNGG 4 cut(s) 281, 341, 342, 448
BmsI GCATC 2 cut(s) 379, 586
BmtI GCTAGC 1 cut(s) 365
BpiI GAAGAC 1 cut(s) 359
Bpu10I CCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 558
BpuMI CCSGG 2 cut(s) 341, 342
BsaHI GRCGYC 1 cut(s) 24
BsaJI CCNNGG 2 cut(s) 339, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 71, 356
BseBI CCWGG 2 cut(s) 281, 448
BseDI CCNNGG 2 cut(s) 339, 340
BseGI GGATG 1 cut(s) 504
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 71, 356
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 116, 479
BseXI GCAGC 1 cut(s) 611
BshFI GGCC 1 cut(s) 659
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 1 cut(s) 347
BsnI GGCC 1 cut(s) 659
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 3 cut(s) 428, 456, 586
BspACI CCGC 3 cut(s) 27, 627, 664
BspANI GGCC 1 cut(s) 659
BspHI TCATGA 2 cut(s) 252, 301
BspLI GGNNCC 3 cut(s) 337, 504, 625
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 436
BspQI GCTCTTC 1 cut(s) 267
BsrDI GCAATG 2 cut(s) 71, 356
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 2 cut(s) 339, 340
BssMI GATC 3 cut(s) 428, 456, 586
BssNI GRCGYC 1 cut(s) 24
Bst2UI CCWGG 2 cut(s) 281, 448
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 41, 363
BstDEI CTNAG 2 cut(s) 96, 675
BstF5I GGATG 1 cut(s) 504
BstKTI GATC 3 cut(s) 431, 459, 589
BstMBI GATC 3 cut(s) 428, 456, 586
BstNI CCWGG 2 cut(s) 281, 448
BstSCI CCNGG 4 cut(s) 279, 339, 340, 446
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 1 cut(s) 359
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 659
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 41, 363
CciI TCATGA 2 cut(s) 252, 301
Cfr13I GGNCC 3 cut(s) 335, 450, 623
Cfr9I CCCGGG 1 cut(s) 340
CseI GACGC 2 cut(s) 32, 530
CsiI ACCWGGT 1 cut(s) 279
CviAII CATG 5 cut(s) 253, 302, 454, 611, 661
CviJI RGCY 5 cut(s) 95, 260, 365, 434, 659
CviKI_1 RGCY 5 cut(s) 95, 260, 365, 434, 659
DdeI CTNAG 2 cut(s) 96, 675
DpnI GATC 3 cut(s) 430, 458, 588
DpnII GATC 3 cut(s) 428, 456, 586
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 335, 450, 623
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 623
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 2 cut(s) 279, 446
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 5 cut(s) 256, 305, 457, 614, 664
FatI CATG 5 cut(s) 252, 301, 453, 610, 660
FauI CCCGC 2 cut(s) 634, 657
FbaI TGATCA 2 cut(s) 456, 586
FblI GTMKAC 2 cut(s) 544, 670
Fnu4HI GCNGC 2 cut(s) 27, 600
FokI GGATG 1 cut(s) 511
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 27, 600
FspBI CTAG 2 cut(s) 240, 362
GluI GCNGC 2 cut(s) 27, 600
HaeIII GGCC 1 cut(s) 659
HapII CCGG 1 cut(s) 341
HgaI GACGC 2 cut(s) 32, 530
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 5 cut(s) 256, 305, 457, 614, 664
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 1 cut(s) 512
HpaII CCGG 1 cut(s) 341
HphI GGTGA 3 cut(s) 39, 418, 631
Hpy166II GTNNAC 4 cut(s) 22, 277, 545, 671
Hpy188I TCNGA 2 cut(s) 153, 246
Hpy188III TCNNGA 3 cut(s) 179, 253, 302
Hpy8I GTNNAC 4 cut(s) 22, 277, 545, 671
HpyCH4V TGCA 5 cut(s) 59, 71, 76, 88, 599
HpyF3I CTNAG 2 cut(s) 96, 675
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 5 cut(s) 256, 305, 457, 614, 664
Ksp22I TGATCA 2 cut(s) 456, 586
Kzo9I GATC 3 cut(s) 428, 456, 586
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 2 cut(s) 379, 586
MabI ACCWGGT 1 cut(s) 279
MaeI CTAG 2 cut(s) 240, 362
MalI GATC 3 cut(s) 430, 458, 588
MboI GATC 3 cut(s) 428, 456, 586
MboII GAAGA 4 cut(s) 131, 254, 317, 364
MfeI CAATTG 1 cut(s) 416
MhlI GDGCHC 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 6 cut(s) 316, 372, 411, 416, 478, 614
MluNI TGGCCA 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 7 cut(s) 16, 94, 186, 249, 265, 457, 460
Mox20I TGGCCA 1 cut(s) 659
MscI TGGCCA 1 cut(s) 659
MseI TTAA 2 cut(s) 315, 377
MslI CAYNNNNRTG 1 cut(s) 594
Msp20I TGGCCA 1 cut(s) 659
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 4 cut(s) 281, 341, 342, 448
MunI CAATTG 1 cut(s) 416
MvaI CCWGG 2 cut(s) 281, 448
NciI CCSGG 2 cut(s) 341, 342
NdeII GATC 3 cut(s) 428, 456, 586
NheI GCTAGC 1 cut(s) 361
NlaIII CATG 5 cut(s) 256, 305, 457, 614, 664
NlaIV GGNNCC 3 cut(s) 337, 504, 625
PagI TCATGA 2 cut(s) 252, 301
PciSI GCTCTTC 1 cut(s) 267
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 1 cut(s) 512
PkrI GCNGC 2 cut(s) 28, 601
PpuMI RGGWCCY 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 279, 446
PspGI CCWGG 2 cut(s) 279, 446
PspN4I GGNNCC 3 cut(s) 337, 504, 625
PspPI GGNCC 3 cut(s) 335, 450, 623
PspPPI RGGWCCY 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 594
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 315, 377
SatI GCNGC 2 cut(s) 27, 600
Sau3AI GATC 3 cut(s) 428, 456, 586
Sau96I GGNCC 3 cut(s) 335, 450, 623
ScrFI CCNGG 4 cut(s) 281, 341, 342, 448
SduI GDGCHC 1 cut(s) 262
SexAI ACCWGGT 1 cut(s) 279
SfaNI GCATC 2 cut(s) 379, 586
SinI GGWCC 3 cut(s) 335, 450, 623
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
SpeI ACTAGT 1 cut(s) 239
Sse9I AATT 6 cut(s) 316, 372, 411, 416, 478, 614
SsiI CCGC 3 cut(s) 27, 627, 664
SspI AATATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 240, 362
StyD4I CCNGG 4 cut(s) 279, 339, 340, 446
TaqI TCGA 1 cut(s) 180
TasI AATT 6 cut(s) 316, 372, 411, 416, 478, 614
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 2 cut(s) 315, 377
Tru9I TTAA 2 cut(s) 315, 377
TseI GCWGC 1 cut(s) 599
TspDTI ATGAA 6 cut(s) 185, 201, 290, 318, 542, 627
TspMI CCCGGG 1 cut(s) 340
VpaK11BI GGWCC 3 cut(s) 335, 450, 623
XapI RAATTY 2 cut(s) 411, 478
XmaI CCCGGG 1 cut(s) 340
XmiI GTMKAC 2 cut(s) 544, 670
XspI CTAG 2 cut(s) 240, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.