Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Reverse (-)

25505374 .. 25508046

Gene Structure 2673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG130000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGTTTTGCAGTGCGAGAAAACTTGCAAGGAGCTAAGAACGATTTTGGGAAAACTGAAGATGATTTGAAGTCGCTTCAAAGTGTTGGTCAGATTATAGGGGAAGTTCTGAGACCTCTCGATTATGAACACTATACTGAATCTGGAAATGGCACACATCCACCCTTCACTTTAAACAGTCCTATCTTTCTGAAGGCAGGGAAGAATGAAATTGCTCTACTCAGCATGACAGTTGGTCTGCAGTCCTATCAGACTTTGTTTCATGAGGGAGAGTGCTTTTTGCACATTGTCTCTTTACTAAATGGTAACCTTGATGATGCTAATGGAGAGACTTTGGTTCTGGGTGTCCTTCAAACTCTTACCTGTTTGCTTGCAAGCAATGACACATCAAAGCCTGAATTATCTGCGCTCGTAGAAGCCCTTGAACAGTGTGCTTGCAATCCTGATGTTTCTGTAGAGGTTGCTGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Beach DUF4704 DUF4800 Laminin_G_3 PH_BEACH WD40

Protein Analysis

157

Amino Acids

16.84

Weight (kDa)

4.43

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Neurobeachin	PF20425	80 - 131	7.7e-23	Neurobeachin alpha solenoid region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	78, 212
AgsI	TTSAA	4 cut(s)	70, 80, 353, 425
AhdI	GACNNNNNGTC	1 cut(s)	234
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
Alw26I	GTCTC	3 cut(s)	106, 295, 323
ApeKI	GCWGC	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
AspLEI	GCGC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	451
BcoDI	GTCTC	3 cut(s)	106, 295, 323
BfmI	CTRYAG	3 cut(s)	239, 453, 465
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmeRI	GACNNNNNGTC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	307
BsaI	GGTCTC	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	385
BseMII	CTCAG	2 cut(s)	101, 235
BseXI	GCAGC	1 cut(s)	451
BsmAI	GTCTC	3 cut(s)	106, 295, 323
Bso31I	GGTCTC	1 cut(s)	106
BspCNI	CTCAG	2 cut(s)	102, 234
BspHI	TCATGA	1 cut(s)	262
BspMAI	CTGCAG	2 cut(s)	243, 469
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	385
Bst4CI	ACNGT	3 cut(s)	179, 232, 429
BstC8I	GCNNGC	3 cut(s)	372, 376, 436
BstDEI	CTNAG	3 cut(s)	36, 110, 221
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	409
BstMAI	GTCTC	3 cut(s)	106, 295, 323
BstPI	GGTNACC	1 cut(s)	305
BstSFI	CTRYAG	3 cut(s)	239, 453, 465
BstV1I	GCAGC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 434
Cac8I	GCNNGC	3 cut(s)	372, 376, 436
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	1 cut(s)	409
CviAII	CATG	2 cut(s)	226, 263
CviJI	RGCY	3 cut(s)	35, 394, 419
CviKI_1	RGCY	3 cut(s)	35, 394, 419
DdeI	CTNAG	3 cut(s)	36, 110, 221
DraI	TTTAAA	1 cut(s)	174
DriI	GACNNNNNGTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	78, 212
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
FaeI	CATG	2 cut(s)	229, 266
FaiI	YATR	5 cut(s)	98, 126, 135, 227, 264
FatI	CATG	2 cut(s)	225, 262
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	465
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	229, 266
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	1 cut(s)	140
Hpy188I	TCNGA	4 cut(s)	93, 111, 192, 252
Hpy188III	TCNNGA	4 cut(s)	119, 144, 263, 443
HpyAV	CCTTC	3 cut(s)	175, 187, 359
HpyCH4III	ACNGT	3 cut(s)	179, 232, 429
HpyCH4V	TGCA	7 cut(s)	11, 28, 241, 283, 374, 438, 467
HpyF3I	CTNAG	3 cut(s)	36, 110, 221
Hsp92II	CATG	2 cut(s)	229, 266
HspAI	GCGC	1 cut(s)	407
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	7 cut(s)	129, 183, 326, 376, 408, 453, 456
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	305
MboII	GAAGA	2 cut(s)	71, 214
MluCI	AATT	2 cut(s)	210, 398
MnlI	CCTC	3 cut(s)	126, 259, 451
MseI	TTAA	1 cut(s)	173
NlaIII	CATG	2 cut(s)	229, 266
PagI	TCATGA	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	466
PspEI	GGTNACC	1 cut(s)	305
PstI	CTGCAG	2 cut(s)	243, 469
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	465
SetI	ASST	5 cut(s)	37, 118, 312, 365, 462
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	3 cut(s)	239, 453, 465
Sse9I	AATT	2 cut(s)	210, 398
TaaI	ACNGT	3 cut(s)	179, 232, 429
TaqI	TCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	210, 398
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	18, 434
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	141, 222, 251
TspRI	CASTG	2 cut(s)	18, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.