Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Reverse (-)

24143612 .. 24160926

Gene Structure 17315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG154900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACGTCGACCGAGACGAAGGACGCCGTACAACGTAGCACCGCCATCACCGATTACCGCAAGAGGTTACTCCGGCACAAGGAGCTCGACTCTCGAGTTCGTGCAGTGATAGTGAAGGCAAGTAGTGGCCCTAGGGCTCTTCCAAGAGAGGTTGACGCAGTAGTGTATAATATGTTTCATGAAGATCCAGCTTTGTTGTTGGTTGGGAACGTTAGCAAGGATCTGATGATGGAGGATTGGGTCAAGCAGTTTGAGGAACTTGCTAGCGGTCAGTCTTTTCTTCAACCTAGGGCCTGCATATATGTACAGAAGGAGTACTTCACCTTAAGAGACTTATTGAATGAACCGCATGGGCTGCGTGATTCAAGTCTTGCGCGTGGTAAAAAGTCAGGTCCTAAGTTATTGGTGATTACTAATAAGGTGAGCCGGGAAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

145

Amino Acids

16.5

Weight (kDa)

9.44

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	376
AciI	CCGC	4 cut(s)	42, 58, 267, 347
AclI	AACGTT	1 cut(s)	210
AclWI	GGATC	2 cut(s)	179, 228
AcyI	GRCGYC	2 cut(s)	5, 24
AfaI	GTAC	3 cut(s)	30, 306, 317
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflII	CTTAAG	1 cut(s)	325
AgsI	TTSAA	3 cut(s)	284, 340, 366
AluBI	AGCT	2 cut(s)	85, 191
AluI	AGCT	2 cut(s)	85, 191
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	8, 324
AlwI	GGATC	2 cut(s)	179, 228
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	2 cut(s)	127, 291
ApeKI	GCWGC	1 cut(s)	355
AspA2I	CCTAGG	2 cut(s)	131, 287
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	3 cut(s)	128, 291, 392
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	4 cut(s)	40, 313, 418, 433
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	392
AvrII	CCTAGG	2 cut(s)	131, 287
BanII	GRGCYC	2 cut(s)	87, 139
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	53, 223
BceAI	ACGGC	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	8, 324
BfaI	CTAG	3 cut(s)	132, 264, 288
BfrI	CTTAAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	356
BlnI	CCTAGG	2 cut(s)	131, 287
BlsI	GCNGC	1 cut(s)	357
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	3 cut(s)	128, 291, 392
BmrFI	CCNGG	1 cut(s)	428
BmtI	GCTAGC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BpuMI	CCSGG	1 cut(s)	428
BsaHI	GRCGYC	2 cut(s)	5, 24
BsaJI	CCNNGG	2 cut(s)	131, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
BseDI	CCNNGG	2 cut(s)	131, 287
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseXI	GCAGC	1 cut(s)	342
BsgI	GTGCAG	1 cut(s)	123
Bsh1236I	CGCG	1 cut(s)	376
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	129, 293
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	73, 427
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	8, 324
BsmBI	CGTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	129, 293
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	87, 139
Bsp1407I	TGTACA	1 cut(s)	304
Bsp143I	GATC	2 cut(s)	184, 220
BspACI	CCGC	4 cut(s)	42, 58, 267, 347
BspANI	GGCC	2 cut(s)	129, 293
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	179, 228
BspQI	GCTCTTC	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	304
BssECI	CCNNGG	2 cut(s)	131, 287
BssMI	GATC	2 cut(s)	184, 220
BssNI	GRCGYC	2 cut(s)	5, 24
BssT1I	CCWWGG	2 cut(s)	131, 287
Bst6I	CTCTTC	1 cut(s)	144
BstACI	GRCGYC	2 cut(s)	5, 24
BstAFI	CTTAAG	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	265, 295
BstDEI	CTNAG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	2 cut(s)	187, 223
BstMAI	GTCTC	2 cut(s)	8, 324
BstMBI	GATC	2 cut(s)	184, 220
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 355
BstSCI	CCNGG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	342
BstX2I	RGATCY	2 cut(s)	184, 220
BstYI	RGATCY	2 cut(s)	184, 220
BsuRI	GGCC	2 cut(s)	129, 293
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	265, 295
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	128, 291, 392
CseI	GACGC	2 cut(s)	32, 164
Csp6I	GTAC	3 cut(s)	29, 305, 316
CviAII	CATG	2 cut(s)	179, 350
CviJI	RGCY	7 cut(s)	85, 129, 137, 191, 293, 355, 426
CviKI_1	RGCY	7 cut(s)	85, 129, 137, 191, 293, 355, 426
CviQI	GTAC	3 cut(s)	29, 305, 316
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	186, 222
DpnII	GATC	2 cut(s)	184, 220
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	131, 287
Eco24I	GRGCYC	2 cut(s)	87, 139
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	2 cut(s)	291, 392
EcoT14I	CCWWGG	2 cut(s)	131, 287
EcoT38I	GRGCYC	2 cut(s)	87, 139
ErhI	CCWWGG	2 cut(s)	131, 287
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	2 cut(s)	182, 353
FaiI	YATR	8 cut(s)	168, 173, 180, 299, 301, 303, 351, 436
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	2 cut(s)	178, 349
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	356
FriOI	GRGCYC	2 cut(s)	87, 139
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	3 cut(s)	132, 264, 288
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	129, 293
HapII	CCGG	2 cut(s)	73, 427
HgaI	GACGC	2 cut(s)	32, 164
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	2 cut(s)	5, 24
Hin1II	CATG	2 cut(s)	182, 353
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HincII	GTYRAC	2 cut(s)	9, 154
HindII	GTYRAC	2 cut(s)	9, 154
HinfI	GANTC	2 cut(s)	89, 362
HpaII	CCGG	2 cut(s)	73, 427
HphI	GGTGA	4 cut(s)	40, 313, 418, 433
Hpy166II	GTNNAC	2 cut(s)	9, 154
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	93, 179
Hpy8I	GTNNAC	2 cut(s)	9, 154
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	13, 109, 304
HpyCH4IV	ACGT	3 cut(s)	5, 34, 210
HpyCH4V	TGCA	2 cut(s)	104, 297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 355
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	3 cut(s)	5, 34, 210
Hsp92I	GRCGYC	2 cut(s)	5, 24
Hsp92II	CATG	2 cut(s)	182, 353
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	184, 220
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	4 cut(s)	86, 201, 307, 375
Lsp1109I	GCAGC	1 cut(s)	342
MaeI	CTAG	3 cut(s)	132, 264, 288
MaeII	ACGT	3 cut(s)	5, 34, 210
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	2 cut(s)	186, 222
MboI	GATC	2 cut(s)	184, 220
MboII	GAAGA	3 cut(s)	131, 194, 272
MflI	RGATCY	2 cut(s)	184, 220
MhlI	GDGCHC	2 cut(s)	87, 139
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	57, 142, 226, 247
MseI	TTAA	1 cut(s)	326
MspCI	CTTAAG	1 cut(s)	325
MspI	CCGG	2 cut(s)	73, 427
MspR9I	CCNGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	82, 355
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	2 cut(s)	184, 220
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	182, 353
PaeR7I	CTCGAG	1 cut(s)	93
PagI	TCATGA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	357
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	392
PspPI	GGNCC	3 cut(s)	128, 291, 392
PspPPI	RGGWCCY	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	184, 220
RsaI	GTAC	3 cut(s)	30, 306, 317
RsaNI	GTAC	3 cut(s)	29, 305, 316
SacI	GAGCTC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	7
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	2 cut(s)	184, 220
Sau96I	GGNCC	3 cut(s)	128, 291, 392
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	87, 139
Sfr274I	CTCGAG	1 cut(s)	93
SinI	GGWCC	1 cut(s)	392
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	93, 325
SmoI	CTYRAG	2 cut(s)	93, 325
SsiI	CCGC	4 cut(s)	42, 58, 267, 347
SspMI	CTAG	3 cut(s)	132, 264, 288
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	2 cut(s)	131, 287
TaiI	ACGT	3 cut(s)	8, 37, 213
TaqI	TCGA	3 cut(s)	8, 87, 94
TaqII	GACCGA	1 cut(s)	26
TatI	WGTACW	2 cut(s)	304, 315
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	167, 195, 357
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	93
XmaJI	CCTAGG	2 cut(s)	131, 287
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	3 cut(s)	132, 264, 288
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.