Rmu_sc0005715.1_g000006

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005715.1
OG0005939
Physical Location & Seq
Reverse (-)
24567 .. 25112
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005715.1_g000006.1.cds

Sequence Viewer

Length: 312 bp
ctgattcgattcggcggagaaggcagcgatagctctcagatctcttcttctcccaaaaacctcttagaccccagcaccgctgtgataaccttcaccgagacggaggacgctgtacgacatcgcaccgccatcatcgattaccgcaagtggttactccaacaaaaggagctcgactctcgagtctatgcagtgcgagaaaatttgcgaggagctaagaaggagtttgggaaaactgaagatgatttgaagtcgcttcaaagtgttggtcacattatagaggaagttctaagacctcttgattatgacaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

103

Amino Acids

11.71

Weight (kDa)

5.37

Isoelectric Point (pI)

71.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 179
AciI CCGC 4 cut(s) 15, 78, 126, 142
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 247, 257
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 3 cut(s) 33, 169, 212
AluI AGCT 3 cut(s) 33, 169, 212
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 199
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 177
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 310
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bsa29I ATCGAT 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseCI ATCGAT 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 4 cut(s) 15, 78, 126, 142
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 135
BssMI GATC 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 4 cut(s) 36, 64, 213, 287
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
BtgZI GCGATG 1 cut(s) 104
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 135
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 113
CviJI RGCY 3 cut(s) 33, 169, 212
CviKI_1 RGCY 3 cut(s) 33, 169, 212
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 4 cut(s) 36, 64, 213, 287
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 179
DseDI GACNNNNNNGTC 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 255
Eco88I CYCGRG 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 3 cut(s) 186, 275, 303
Fnu4HI GCNGC 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 310
GluI GCNGC 1 cut(s) 25
GsaI CCCAGC 1 cut(s) 75
HgaI GACGC 1 cut(s) 116
HinfI GANTC 4 cut(s) 4, 9, 173, 180
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 177, 296
HpyAV CCTTC 3 cut(s) 14, 100, 211
HpyCH4V TGCA 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 4 cut(s) 36, 64, 213, 287
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 166, 209
LpnPI CCDG 1 cut(s) 85
Lsp1109I GCAGC 1 cut(s) 36
MaeI CTAG 1 cut(s) 310
MaeIII GTNAC 2 cut(s) 150, 266
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 36, 39, 248
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 1 cut(s) 199
MlyI GAGTC 2 cut(s) 167, 189
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 71, 97, 200, 271, 303
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeII GATC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 177
PfeI GAWTC 2 cut(s) 4, 9
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 2 cut(s) 167, 188
PpsI GAGTC 2 cut(s) 167, 188
Psp124BI GAGCTC 1 cut(s) 171
PspFI CCCAGC 1 cut(s) 71
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 171
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 2 cut(s) 167, 189
SduI GDGCHC 1 cut(s) 171
SetI ASST 6 cut(s) 35, 63, 92, 171, 214, 295
Sfr274I CTCGAG 1 cut(s) 177
SgeI CNNG 9 cut(s) 84, 109, 157, 182, 189, 191, 206, 218, 308
SlaI CTCGAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 199
SsiI CCGC 4 cut(s) 15, 78, 126, 142
SspMI CTAG 1 cut(s) 310
SstI GAGCTC 1 cut(s) 171
TaqI TCGA 4 cut(s) 7, 135, 171, 178
TasI AATT 1 cut(s) 199
TfiI GAWTC 2 cut(s) 4, 9
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 266
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 195
XapI RAATTY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 177
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.