RLG00000035629

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005939
Physical Location & Seq
Reverse (-)
69500136 .. 69503222
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035629

Sequence Viewer

Length: 681 bp
ATGGATTTGGATGATTTTTTCACGTACATACGGTCGTGGTCAGCATATCAGACGGCTAAGGACAAGGGTGTTGAGCTTCTGAGTGACGATCTGATGGAGGAATTTAAGCAAGCTTGGAATGCTGGTGGAGGCCCACTCACTGCCTCGATGACGTCGACCGAGACGGACGACGCCGTACGTCGTTGCACCGCCATCACCGATTACCGCAAGAGGTTACTCCAGCACAAGGAGCTCGATTCCCGAGTCCGCGCAGGTCAGATTCGCACTCCAAACCTCGTCCTCTACTTATTTCGAACTAGAAATTGTGAGAAGAAGGAGTTTGGGAAAACTAGAGATGATTTGAAGTCGCCTCAAAGTCTCGGTCAGATTATAGGGGAAGTTCTGAGACCTCTCGATAATATTGAACGCTGTGGCGGAGCTGGATCTGCTAAGCACATGCACTTGTTAATCGACATAGCTCATCTTGCAACCAACAACACAGAGATTGAGCTTTCCTCTCAATTTGTTTCAGTTCTAATCTATGAGCAATTTGAACTATGTATTCTGCACAACAATGCGTTCATGTATCTTGGGGTTGGAGTGATGCATATCCCAGGCTACGGCGTCTTTGCTTTAATTGTTAGGATGAAGCAGTTGTGGTTCTCAAGATCATTCCCGGAGTCCTTTCAGGGCGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

227

Amino Acids

25.79

Weight (kDa)

6.31

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 155
AccII CGCG 1 cut(s) 249
AciI CCGC 4 cut(s) 189, 205, 247, 414
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 1 cut(s) 101
AcyI GRCGYC 3 cut(s) 152, 171, 603
AfaI GTAC 2 cut(s) 26, 177
AfiI CCNNNNNNNGG 2 cut(s) 226, 599
AgsI TTSAA 3 cut(s) 343, 404, 533
AjnI CCWGG 1 cut(s) 592
AluBI AGCT 6 cut(s) 76, 113, 232, 419, 458, 490
AluI AGCT 6 cut(s) 76, 113, 232, 419, 458, 490
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 3 cut(s) 155, 362, 379
AlwI GGATC 1 cut(s) 430
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AspLEI GCGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 656
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 1 cut(s) 292
AvaI CYCGRG 1 cut(s) 240
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 2 cut(s) 88, 200
BceAI ACGGC 3 cut(s) 69, 158, 616
BciT130I CCWGG 1 cut(s) 594
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 3 cut(s) 155, 362, 379
BfaI CTAG 2 cut(s) 297, 330
BfuAI ACCTGC 1 cut(s) 242
BlpI GCTNAGC 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 594, 656
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 2 cut(s) 594, 656
BmsI GCATC 1 cut(s) 573
BplI GAGNNNNNCTC 4 cut(s) 120, 152, 479, 511
BpmI CTGGAG 1 cut(s) 203
Bpu10I CCTNAGC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 628
BpuMI CCSGG 1 cut(s) 656
BsaAI YACGTR 1 cut(s) 24
BsaBI GATNNNNATC 1 cut(s) 587
BsaHI GRCGYC 3 cut(s) 152, 171, 603
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 592
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 599
Bse8I GATNNNNATC 1 cut(s) 587
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 1 cut(s) 592
BseGI GGATG 2 cut(s) 16, 630
BseJI GATNNNNATC 1 cut(s) 587
BseLI CCNNNNNNNGG 2 cut(s) 226, 599
BseMII CTCAG 2 cut(s) 71, 374
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 249
Bsh1285I CGRYCG 2 cut(s) 35, 159
BshFI GGCC 1 cut(s) 132
BsiEI CGRYCG 2 cut(s) 35, 159
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 1 cut(s) 656
BsiWI CGTACG 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 226, 599
BsmAI GTCTC 3 cut(s) 155, 362, 379
BsmBI CGTCTC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 132
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 240
Bsp119I TTCGAA 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 88, 422, 647
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 4 cut(s) 189, 205, 247, 414
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 2 cut(s) 72, 375
BspFNI CGCG 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 430
BspT104I TTCGAA 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 592
BssMI GATC 3 cut(s) 88, 422, 647
BssNI GRCGYC 3 cut(s) 152, 171, 603
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 33
BstACI GRCGYC 3 cut(s) 152, 171, 603
BstBAI YACGTR 1 cut(s) 24
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 4 cut(s) 57, 80, 383, 429
BstF5I GGATG 2 cut(s) 16, 630
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 251
BstKTI GATC 3 cut(s) 91, 425, 650
BstMAI GTCTC 3 cut(s) 155, 362, 379
BstMBI GATC 3 cut(s) 88, 422, 647
BstMCI CGRYCG 2 cut(s) 35, 159
BstMWI GCNNNNNNNGC 4 cut(s) 119, 229, 425, 464
BstNI CCWGG 1 cut(s) 594
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 592, 654
BstUI CGCG 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 16, 630
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 2 cut(s) 179, 592
Csp6I GTAC 2 cut(s) 25, 176
CviAII CATG 2 cut(s) 436, 562
CviJI RGCY 9 cut(s) 56, 76, 113, 132, 232, 419, 458, 490, 597
CviKI_1 RGCY 9 cut(s) 56, 76, 113, 132, 232, 419, 458, 490, 597
CviQI GTAC 2 cut(s) 25, 176
DdeI CTNAG 4 cut(s) 57, 80, 383, 429
DpnI GATC 3 cut(s) 90, 424, 649
DpnII GATC 3 cut(s) 88, 422, 647
EciI GGCGGA 1 cut(s) 429
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 232
Eco88I CYCGRG 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 592
EcoT22I ATGCAT 1 cut(s) 588
EcoT38I GRGCYC 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 2 cut(s) 439, 565
FaiI YATR 9 cut(s) 29, 46, 371, 437, 455, 522, 538, 563, 588
FatI CATG 2 cut(s) 435, 561
FblI GTMKAC 1 cut(s) 155
FokI GGATG 2 cut(s) 23, 637
FriOI GRGCYC 1 cut(s) 234
FspBI CTAG 2 cut(s) 297, 330
GlaI GCGC 1 cut(s) 250
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 132
HapII CCGG 1 cut(s) 656
HgaI GACGC 2 cut(s) 179, 592
HhaI GCGC 1 cut(s) 251
Hin1I GRCGYC 3 cut(s) 152, 171, 603
Hin1II CATG 2 cut(s) 439, 565
Hin6I GCGC 1 cut(s) 249
HinP1I GCGC 1 cut(s) 249
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 4 cut(s) 236, 243, 259, 659
HpaII CCGG 1 cut(s) 656
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 6 cut(s) 51, 81, 93, 258, 366, 384
Hpy188III TCNNGA 3 cut(s) 240, 392, 645
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 3 cut(s) 157, 173, 183
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 3 cut(s) 23, 152, 178
HpyCH4V TGCA 5 cut(s) 186, 439, 467, 547, 586
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 229, 425, 464
HpyF3I CTNAG 4 cut(s) 57, 80, 383, 429
HpySE526I ACGT 3 cut(s) 23, 152, 178
Hsp92I GRCGYC 3 cut(s) 152, 171, 603
Hsp92II CATG 2 cut(s) 439, 565
HspAI GCGC 1 cut(s) 249
Kzo9I GATC 3 cut(s) 88, 422, 647
LmnI GCTCC 2 cut(s) 229, 416
LpnPI CCDG 8 cut(s) 108, 233, 237, 405, 579, 606, 653, 669
LweI GCATC 1 cut(s) 573
MaeI CTAG 2 cut(s) 297, 330
MaeII ACGT 3 cut(s) 23, 152, 178
MaeIII GTNAC 2 cut(s) 83, 213
MalI GATC 3 cut(s) 90, 424, 649
MboI GATC 3 cut(s) 88, 422, 647
MboII GAAGA 1 cut(s) 322
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 5 cut(s) 101, 301, 500, 527, 615
MlyI GAGTC 2 cut(s) 252, 668
MmeI TCCRAC 1 cut(s) 556
Mph1103I ATGCAT 1 cut(s) 588
MseI TTAA 3 cut(s) 105, 446, 614
MslI CAYNNNNRTG 1 cut(s) 552
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 2 cut(s) 594, 656
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 594
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 4 cut(s) 119, 229, 425, 464
NciI CCSGG 1 cut(s) 656
NdeII GATC 3 cut(s) 88, 422, 647
NlaIII CATG 2 cut(s) 439, 565
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 1 cut(s) 439
NspV TTCGAA 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 236, 259
Pfl23II CGTACG 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 654
PleI GAGTC 2 cut(s) 251, 667
PpsI GAGTC 2 cut(s) 251, 667
Ppu21I YACGTR 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PspLI CGTACG 1 cut(s) 175
PspPI GGNCC 1 cut(s) 131
PsuI RGATCY 1 cut(s) 422
RsaI GTAC 2 cut(s) 26, 177
RsaNI GTAC 2 cut(s) 25, 176
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 234
SalI GTCGAC 1 cut(s) 154
SaqAI TTAA 3 cut(s) 105, 446, 614
Sau3AI GATC 3 cut(s) 88, 422, 647
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 2 cut(s) 252, 668
ScrFI CCNGG 2 cut(s) 594, 656
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 5 cut(s) 101, 301, 500, 527, 615
SsiI CCGC 4 cut(s) 189, 205, 247, 414
SspI AATATT 1 cut(s) 400
SspMI CTAG 2 cut(s) 297, 330
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 592, 654
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 3 cut(s) 26, 155, 181
TaqI TCGA 6 cut(s) 146, 155, 234, 292, 393, 450
TaqII GACCGA 2 cut(s) 173, 350
TasI AATT 5 cut(s) 101, 301, 500, 527, 615
TfiI GAWTC 2 cut(s) 236, 259
Tru1I TTAA 3 cut(s) 105, 446, 614
Tru9I TTAA 3 cut(s) 105, 446, 614
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 550, 641
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 145
XapI RAATTY 1 cut(s) 101
XceI RCATGY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 155
XspI CTAG 2 cut(s) 297, 330
ZraI GACGTC 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.