Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005939

Physical Location & Seq

Genomic Coordinates Forward (+)

38403206 .. 38406661

Gene Structure 3456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG308200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCGCCAGCGCACCAATGTTGTGCGATTGAGAACCTCTGTTGGAGCTTTCTGCTAACATATGGTGTCAGAGTTGGAACTGAGATTTTGCTTCGCATGTTTAAGCTGTCTCGTAGACAGTCCTACTCTTCCTGGCTCCATCTTAAGTGCAATCTGCAACAAGGGATGGAGGGAAATCCTATTGCTGAAATCATCCAACCCATCGATATGATGAAGTTGAGAATTCATTTGGGTCTGGGATCAGCTGGACAAGTTGCCAGGACCATGATCAAGGAGGAGGGTTTTGGTTCATTGTATAAGGACCTGAGTAACCAACCTAGGTTATTGCAAACCCAACTTTCAGAAATAAAGAAGAGATTAAGCTGTTGGACGAACCCTGATAAGATCAACAATGTAGATCAGTTGGGGCAAATGGAAGATTCAATTCGAGAATCGCCTAACCAGATTCAAACACATAAGTGTTATGAACCTCTTCGGGCTGGTAGATTGACAGATGGACCTTACACATCATATGATCTTAATACATTGCTCAAAGCTGCAGCTGGCCAACGATGTGCAGTCCTAATAGGTCAAGGAGATACACTAGTTGGAGAGGAAAGATATTTGAAGTCAACAGTTGAGGAACCAAAGGTGGTTGATCTTGCTCGATTCTTGACTAAAAGTGGGACCTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009908 GO:0010093 GO:0010097 GO:0022414 GO:0032501 GO:0032502 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

225

Amino Acids

25.42

Weight (kDa)

8.64

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005939)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0485741 RchiOBHm_Chr4g0401931 RchiOBHm_Chr5g0050431 RchiOBHm_Chr5g0082021
rosa_laevigata	RLG00000001409 RLG00000035629
rosa_multiflora	Rmu_sc0000882.1_g000016 Rmu_sc0002345.1_g000024 Rmu_sc0005529.1_g000010 Rmu_sc0005715.1_g000006 Rmu_sc0008931.1_g000003
rosa_roxburghii	Rroxscaffold_2G00103810 Rroxscaffold_3G00224270 Rroxscaffold_6G00406150
rosa_rugosa	Rorug05G0086300 Rorug05G0525400
rosa_samantha	Rh2BG482000 Rh2CG308200 Rh4CG031900 Rh4CG130000 Rh5AG312800 Rh5BG342800 Rh6AG129700 Rh6AG138300 Rh6AG154900 Rh7BG245200 Rh7CG257600 Rh7CG295100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	222
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	423, 449, 607
AhlI	ACTAGT	1 cut(s)	583
AjnI	CCWGG	2 cut(s)	131, 257
AleI	CACNNNNGTG	1 cut(s)	457
AluBI	AGCT	6 cut(s)	48, 106, 245, 363, 536, 542
AluI	AGCT	6 cut(s)	48, 106, 245, 363, 536, 542
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	536, 539
ApoI	RAATTY	1 cut(s)	222
Asp700I	GAANNNNTTC	1 cut(s)	471
AspA2I	CCTAGG	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	4 cut(s)	261, 301, 497, 666
AvaII	GGWCC	4 cut(s)	261, 301, 497, 666
AvrII	CCTAGG	1 cut(s)	317
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BalI	TGGCCA	1 cut(s)	546
BbvI	GCAGC	2 cut(s)	523, 551
BccI	CCATC	4 cut(s)	147, 160, 209, 488
BciT130I	CCWGG	2 cut(s)	133, 259
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	114
BcuI	ACTAGT	1 cut(s)	583
BfaI	CTAG	2 cut(s)	318, 584
BfmI	CTRYAG	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	3 cut(s)	5, 537, 540
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	3 cut(s)	6, 538, 541
Bme1390I	CCNGG	2 cut(s)	133, 259
Bme18I	GGWCC	4 cut(s)	261, 301, 497, 666
BmgT120I	GGNCC	4 cut(s)	261, 301, 497, 666
BmiI	GGNNCC	3 cut(s)	137, 624, 667
BmrFI	CCNGG	2 cut(s)	133, 259
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	133, 259
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	171, 192
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	2 cut(s)	72, 296
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	523, 551
BsgI	GTGCAG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	546
Bsp143I	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	2 cut(s)	73, 297
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	137, 624, 667
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	2 cut(s)	133, 259
Bst4CI	ACNGT	2 cut(s)	120, 616
Bst6I	CTCTTC	3 cut(s)	133, 347, 477
BstAFI	CTTAAG	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	9, 544
BstDEI	CTNAG	2 cut(s)	81, 305
BstF5I	GGATG	2 cut(s)	171, 192
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	6 cut(s)	242, 270, 387, 400, 517, 640
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	133, 259
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	131, 257
BstSFI	CTRYAG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	523, 551
Bsu15I	ATCGAT	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	171, 192
Cac8I	GCNNGC	2 cut(s)	9, 544
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	4 cut(s)	261, 301, 497, 666
ClaI	ATCGAT	1 cut(s)	204
CviAII	CATG	2 cut(s)	97, 265
CviJI	RGCY	9 cut(s)	48, 106, 136, 245, 363, 479, 536, 542, 546
CviKI_1	RGCY	9 cut(s)	48, 106, 136, 245, 363, 479, 536, 542, 546
DdeI	CTNAG	2 cut(s)	81, 305
DpnI	GATC	6 cut(s)	241, 269, 386, 399, 516, 639
DpnII	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	3 cut(s)	133, 347, 477
EarI	CTCTTC	3 cut(s)	133, 347, 477
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	4 cut(s)	261, 301, 497, 666
EcoO109I	RGGNCCY	2 cut(s)	301, 666
EcoRI	GAATTC	1 cut(s)	222
EcoRII	CCWGG	2 cut(s)	131, 257
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	100, 268
FatI	CATG	2 cut(s)	96, 264
FauNDI	CATATG	2 cut(s)	61, 511
FbaI	TGATCA	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	5, 537, 540
FokI	GGATG	2 cut(s)	178, 179
Fsp4HI	GCNGC	3 cut(s)	5, 537, 540
FspBI	CTAG	2 cut(s)	318, 584
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	3 cut(s)	5, 537, 540
HaeIII	GGCC	1 cut(s)	546
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	100, 268
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	4 cut(s)	419, 431, 445, 648
Hpy166II	GTNNAC	2 cut(s)	116, 612
Hpy188I	TCNGA	2 cut(s)	71, 343
Hpy188III	TCNNGA	2 cut(s)	428, 652
Hpy8I	GTNNAC	2 cut(s)	116, 612
HpyCH4III	ACNGT	2 cut(s)	120, 616
HpyCH4V	TGCA	5 cut(s)	150, 157, 328, 539, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	81, 305
Hsp92II	CATG	2 cut(s)	100, 268
HspAI	GCGC	1 cut(s)	11
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
LmnI	GCTCC	2 cut(s)	45, 141
Lsp1109I	GCAGC	2 cut(s)	523, 551
MaeI	CTAG	2 cut(s)	318, 584
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	6 cut(s)	241, 269, 386, 399, 516, 639
MboI	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
MboII	GAAGA	4 cut(s)	120, 364, 428, 464
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	2 cut(s)	222, 423
MluNI	TGGCCA	1 cut(s)	546
MmeI	TCCRAC	5 cut(s)	23, 55, 220, 347, 568
MnlI	CCTC	7 cut(s)	47, 163, 268, 271, 480, 586, 613
Mox20I	TGGCCA	1 cut(s)	546
MroXI	GAANNNNTTC	1 cut(s)	471
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	4 cut(s)	102, 144, 359, 519
MslI	CAYNNNNRTG	2 cut(s)	206, 457
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	2 cut(s)	245, 542
MspCI	CTTAAG	1 cut(s)	143
MspR9I	CCNGG	2 cut(s)	133, 259
MvaI	CCWGG	2 cut(s)	133, 259
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeI	CATATG	2 cut(s)	61, 511
NdeII	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
NlaIII	CATG	2 cut(s)	100, 268
NlaIV	GGNNCC	3 cut(s)	137, 624, 667
NspI	RCATGY	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	457
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	419, 431, 445, 648
PkrI	GCNGC	3 cut(s)	6, 538, 541
PpuMI	RGGWCCY	2 cut(s)	301, 666
Psp5II	RGGWCCY	2 cut(s)	301, 666
Psp6I	CCWGG	2 cut(s)	131, 257
PspGI	CCWGG	2 cut(s)	131, 257
PspN4I	GGNNCC	3 cut(s)	137, 624, 667
PspPI	GGNCC	4 cut(s)	261, 301, 497, 666
PspPPI	RGGWCCY	2 cut(s)	301, 666
PstI	CTGCAG	1 cut(s)	541
PvuII	CAGCTG	2 cut(s)	245, 542
RseI	CAYNNNNRTG	2 cut(s)	206, 457
SaqAI	TTAA	4 cut(s)	102, 144, 359, 519
SatI	GCNGC	3 cut(s)	5, 537, 540
Sau3AI	GATC	6 cut(s)	239, 267, 384, 397, 514, 637
Sau96I	GGNCC	4 cut(s)	261, 301, 497, 666
ScrFI	CCNGG	2 cut(s)	133, 259
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	4 cut(s)	261, 301, 497, 666
SmiMI	CAYNNNNRTG	2 cut(s)	206, 457
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	583
Sse9I	AATT	2 cut(s)	222, 423
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	318, 584
StyD4I	CCNGG	2 cut(s)	131, 257
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	120, 616
TaqI	TCGA	3 cut(s)	204, 427, 646
TasI	AATT	2 cut(s)	222, 423
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	4 cut(s)	419, 431, 445, 648
Tru1I	TTAA	4 cut(s)	102, 144, 359, 519
Tru9I	TTAA	4 cut(s)	102, 144, 359, 519
TseI	GCWGC	2 cut(s)	536, 539
TspDTI	ATGAA	4 cut(s)	215, 227, 279, 480
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	4 cut(s)	261, 301, 497, 666
XapI	RAATTY	1 cut(s)	222
XceI	RCATGY	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	2 cut(s)	318, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.