Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Forward (+)

39643421 .. 39645712

Gene Structure 2292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38540

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATAGGATGGAGGCCAGCTATTTAGATAAGGCGGCGGAGAAGGGCTCGTTGGTCATTTTGGCTTGTGGGTTTGACTTTGTTCCAGCGGAGTTTGGGTTGATGTTCAACTCGAGGCAATGGGTGGGGGCGGCGGTGCCAAATAGGGTAGAGGCTTATCTGAGCTTGGAGTCTGAGAAGAGAAGTGTTGGGAAGTGGGAACTTCGAGATTGGTTCGGTGTGGCTAATGCGGATAAGTTGATGGAGCTCCAGCGGTCCAGACCTAAAAAGCCGAGGCCGGAGAAGCTAGAAGTACAATGGTATCCAAGACAAATGTTATTTCCTTACTCAGCTAGCCAGAGAGGGTTTACTTATTCCTGGTCCTCCTCTCCTAAAGGACCAACTATTGAACACCAGAAAAGGATTGGTCTTTGGGCTGTGAAGCTACCTTCAGCAGATGCTATAGTCGTGCGAAGAACACTTGGAGCTCTGACCGAAAATCCCGGCGGTCTTGCAGGGAGGAATGAGAGTGATGAACACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

174

Amino Acids

19.69

Weight (kDa)

9.24

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	8 cut(s)	35, 38, 89, 131, 134, 230, 253, 486
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	109, 389
AjnI	CCWGG	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	7 cut(s)	21, 165, 247, 286, 332, 424, 467
AluI	AGCT	7 cut(s)	21, 165, 247, 286, 332, 424, 467
Alw21I	GWGCWC	2 cut(s)	249, 469
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	15, 275
AspS9I	GGNCC	3 cut(s)	255, 360, 377
AsuC2I	CCSGG	1 cut(s)	483
AsuNHI	GCTAGC	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	3 cut(s)	255, 360, 377
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	3 cut(s)	50, 249, 469
Bbv12I	GWGCWC	2 cut(s)	249, 469
BccI	CCATC	2 cut(s)	4, 235
BciT130I	CCWGG	1 cut(s)	358
BciVI	GTATCC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	483
BfaI	CTAG	2 cut(s)	287, 333
BfmI	CTRYAG	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	2 cut(s)	36, 132
BlsI	GCNGC	2 cut(s)	37, 133
Bme1390I	CCNGG	2 cut(s)	358, 483
Bme18I	GGWCC	3 cut(s)	255, 360, 377
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	255, 360, 377
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	2 cut(s)	358, 483
BmsI	GCATC	1 cut(s)	427
BmtI	GCTAGC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bse3DI	GCAATG	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	15
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	3 cut(s)	152, 165, 342
BseRI	GAGGAG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	17, 277
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	249, 469
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	278, 483
BsnI	GGCC	2 cut(s)	17, 277
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	50, 249, 469
BspACI	CCGC	8 cut(s)	35, 38, 89, 131, 134, 230, 253, 486
BspANI	GGCC	2 cut(s)	17, 277
BspCNI	CTCAG	3 cut(s)	153, 166, 341
BspLI	GGNNCC	1 cut(s)	138
BspOI	GCTAGC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	19, 334
BstDEI	CTNAG	3 cut(s)	161, 174, 328
BstF5I	GGATG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	356, 481
BstSFI	CTRYAG	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	17, 277
BtsCI	GGATG	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	19, 334
Cfr13I	GGNCC	3 cut(s)	255, 360, 377
Csp6I	GTAC	1 cut(s)	293
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	3 cut(s)	161, 174, 328
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	2 cut(s)	247, 467
Eco24I	GRGCYC	3 cut(s)	50, 249, 469
Eco47I	GGWCC	3 cut(s)	255, 360, 377
Eco53kI	GAGCTC	2 cut(s)	247, 467
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	2 cut(s)	247, 467
EcoRII	CCWGG	1 cut(s)	356
EcoT38I	GRGCYC	3 cut(s)	50, 249, 469
FaiI	YATR	1 cut(s)	443
Fnu4HI	GCNGC	2 cut(s)	36, 132
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	3 cut(s)	50, 249, 469
Fsp4HI	GCNGC	2 cut(s)	36, 132
FspBI	CTAG	2 cut(s)	287, 333
GluI	GCNGC	2 cut(s)	36, 132
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	2 cut(s)	17, 277
HapII	CCGG	2 cut(s)	278, 483
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	278, 483
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	3 cut(s)	162, 175, 471
Hpy188III	TCNNGA	2 cut(s)	206, 258
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	2 cut(s)	37, 438
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	3 cut(s)	161, 174, 328
LmnI	GCTCC	3 cut(s)	244, 252, 464
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	287, 333
MboII	GAAGA	2 cut(s)	190, 465
MhlI	GDGCHC	3 cut(s)	50, 249, 469
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	8 cut(s)	7, 108, 145, 267, 335, 373, 376, 492
MseI	TTAA	1 cut(s)	523
MspA1I	CMGCKG	2 cut(s)	89, 253
MspI	CCGG	2 cut(s)	278, 483
MspR9I	CCNGG	2 cut(s)	358, 483
MvaI	CCWGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	283
NciI	CCSGG	1 cut(s)	483
NheI	GCTAGC	1 cut(s)	332
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	37, 133
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	2 cut(s)	249, 469
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	255, 360, 377
PspXI	VCTCGAGB	1 cut(s)	112
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SacI	GAGCTC	2 cut(s)	249, 469
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	2 cut(s)	36, 132
Sau96I	GGNCC	3 cut(s)	255, 360, 377
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	358, 483
SduI	GDGCHC	3 cut(s)	50, 249, 469
SetI	ASST	9 cut(s)	23, 167, 249, 265, 288, 334, 426, 430, 469
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	441
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	3 cut(s)	255, 360, 377
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SsiI	CCGC	8 cut(s)	35, 38, 89, 131, 134, 230, 253, 486
SspMI	CTAG	2 cut(s)	287, 333
SstI	GAGCTC	2 cut(s)	249, 469
StyD4I	CCNGG	2 cut(s)	356, 481
TaqI	TCGA	2 cut(s)	113, 205
TaqII	GACCGA	1 cut(s)	488
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	2 cut(s)	38, 134
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
VpaK11BI	GGWCC	3 cut(s)	255, 360, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	401
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	2 cut(s)	287, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.