Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Reverse (-)

65520391 .. 65523767

Gene Structure 3377 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0525000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGTAATGGCTTGACTTTGTGTGTAATTGGATTATGTGTTGCTATACTTTGGATGCAGGTTTGCAGATCCGTGAAATTTCTAGTTGGTGGTGCTTCCTTGAAGGTCTTCCATGAGATGGTTAGTGCTGGAGTAGAACCAAATGTTCACACATATGGGGCACTGATTAATGGTTGTGGCAGAGCTGCGGAAGTGGCAAAGGCATTTGGTGCTTATGGGATATTGAGGTCTAAGGCTTTGGATAAATCGAAGTATATGGATGGCCTTCGAGCAGTAAGGAAGCACATTCAGAAGCTGGAACATGACCTTGAGTTGCTTAAAGCACATGCTAAAACAAAAGTTGAATTTAGTTCTAATGCTATTGAAGAAACTCCTGAAGATATTGAGAGCGTTGAGTCTGGGAGCTCCTCAAACCCCAATGAGGCCATGAGAACAGCAAAGCTAGACACTCTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

152

Amino Acids

16.45

Weight (kDa)

8.34

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	34 - 60	8.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AccB7I	CCANNNNNTGG	1 cut(s)	118
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	77, 344
AcuI	CTGAAG	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	118, 421
AflII	CTTAAG	1 cut(s)	452
AgsI	TTSAA	3 cut(s)	103, 344, 365
AluBI	AGCT	4 cut(s)	185, 295, 405, 442
AluI	AGCT	4 cut(s)	185, 295, 405, 442
Alw21I	GWGCWC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	262, 423
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	77, 344
AseI	ATTAAT	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	107
BaeGI	GKGCMC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	407
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	2 cut(s)	112, 254
BfaI	CTAG	2 cut(s)	83, 443
BfrI	CTTAAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 421
BseGI	GGATG	2 cut(s)	60, 265
BseLI	CCNNNNNNNGG	2 cut(s)	118, 421
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	264, 425
BsiHKAI	GWGCWC	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	118, 421
BsnI	GGCC	2 cut(s)	264, 425
Bsp1286I	GDGCHC	2 cut(s)	163, 407
Bsp143I	GATC	1 cut(s)	68
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	264, 425
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	452
BssMI	GATC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	452
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	60, 265
BstKTI	GATC	1 cut(s)	71
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 209
BstNSI	RCATGY	1 cut(s)	329
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	264, 425
BtsCI	GGATG	2 cut(s)	60, 265
BtsIMutI	CAGTG	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	295
CviAII	CATG	4 cut(s)	113, 302, 326, 427
CviJI	RGCY	8 cut(s)	12, 185, 236, 264, 295, 405, 425, 442
CviKI_1	RGCY	8 cut(s)	12, 185, 236, 264, 295, 405, 425, 442
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	407
FaeI	CATG	4 cut(s)	116, 305, 329, 430
FatI	CATG	4 cut(s)	112, 301, 325, 426
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	67, 272
FriOI	GRGCYC	1 cut(s)	407
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	83, 443
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	264, 425
Hin1II	CATG	4 cut(s)	116, 305, 329, 430
HinfI	GANTC	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	291
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	97, 275
HpyCH4V	TGCA	2 cut(s)	58, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 209
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	116, 305, 329, 430
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	2 cut(s)	402, 410
LpnPI	CCDG	5 cut(s)	44, 114, 281, 384, 387
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	2 cut(s)	83, 443
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	3 cut(s)	100, 377, 389
MflI	RGATCY	1 cut(s)	68
MhlI	GDGCHC	2 cut(s)	163, 407
MluCI	AATT	3 cut(s)	27, 77, 344
MlyI	GAGTC	1 cut(s)	404
MnlI	CCTC	3 cut(s)	219, 415, 418
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	3 cut(s)	168, 318, 453
MslI	CAYNNNNRTG	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	194, 209
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	4 cut(s)	116, 305, 329, 430
NspI	RCATGY	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PshBI	ATTAAT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	407
PstNI	CAGNNNCTG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	153
SacI	GAGCTC	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	168, 318, 453
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	404
SduI	GDGCHC	2 cut(s)	163, 407
SetI	ASST	8 cut(s)	63, 108, 187, 230, 297, 309, 407, 444
SfaNI	GCATC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	308, 452
SmoI	CTYRAG	2 cut(s)	308, 452
Sse9I	AATT	3 cut(s)	27, 77, 344
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	83, 443
SstI	GAGCTC	1 cut(s)	407
TaqI	TCGA	2 cut(s)	248, 268
TasI	AATT	3 cut(s)	27, 77, 344
Tru1I	TTAA	3 cut(s)	168, 318, 453
Tru9I	TTAA	3 cut(s)	168, 318, 453
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	452
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	2 cut(s)	77, 344
XceI	RCATGY	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	2 cut(s)	83, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.