Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8040738.1

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 477

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8040738.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

atgttcaactcgaggcagtgggtgggggcagcggtgccgaatagggtggaggcttatctgagcttggaatctgagaagagaattgttgggaactttgggacgtttgagtcggcggtgttgggtgtggctaatgcgaataagttgatggagctccggcggtccaggcctaaaaaaccgaggccggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

62

Amino Acids

7.0

Weight (kDa)

10.49

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	34
AciI	CCGC	3 cut(s)	32, 113, 157
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	63, 151
AluI	AGCT	2 cut(s)	63, 151
Alw21I	GWGCWC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	10
AoxI	GGCC	2 cut(s)	164, 179
ApeKI	GCWGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	159
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	50, 63
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	2 cut(s)	166, 181
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	154, 182
BslFI	GGGAC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	112
BsnI	GGCC	2 cut(s)	166, 181
BsoBI	CYCGRG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	153
BspACI	CCGC	3 cut(s)	32, 113, 157
BspANI	GGCC	2 cut(s)	166, 181
BspCNI	CTCAG	2 cut(s)	51, 64
BspLI	GGNNCC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	59, 72
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	2 cut(s)	166, 181
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	159
CviJI	RGCY	6 cut(s)	53, 63, 128, 151, 166, 181
CviKI_1	RGCY	6 cut(s)	53, 63, 128, 151, 166, 181
DdeI	CTNAG	2 cut(s)	59, 72
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	153
FaqI	GGGAC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	166, 181
HapII	CCGG	2 cut(s)	154, 182
HinfI	GANTC	2 cut(s)	68, 107
HpaII	CCGG	2 cut(s)	154, 182
Hpy188I	TCNGA	2 cut(s)	60, 73
HpyCH4IV	ACGT	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	2 cut(s)	59, 72
HpySE526I	ACGT	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	148, 156
LpnPI	CCDG	3 cut(s)	148, 167, 175
Lsp1109I	GCAGC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	101
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	3 cut(s)	6, 43, 171
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	154, 182
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	159
PspXI	VCTCGAGB	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	3 cut(s)	65, 104, 153
Sfr274I	CTCGAG	1 cut(s)	10
SgeI	CNNG	6 cut(s)	22, 24, 76, 166, 174, 175
SinI	GGWCC	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	1 cut(s)	81
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	32, 113, 157
SstI	GAGCTC	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	161
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	23
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.