Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004406.1

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Forward (+)

23865 .. 24203

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004406.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggagaggatggaggccagttattttgataaggcggcggagaagggctcgttggtcatttcagcttgtgggttcgactctattatggcggagtttggcttgatgtttaactcaaggcagtgggtgggggcggcggtgccgaatagggtggatgctaatatgagctttgagtctgagaagagaattgttgggaactttggaatgtttgagtcggcagtgttaggtgtggctaatgaggataagttgatggagctccggcagtccagactttttgagccgaggccggaggtaatgaatttgagtaaattaccatactttttggatttgttgattgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

4.83

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	5 cut(s)	35, 38, 89, 131, 134
AcsI	RAATTY	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	3 cut(s)	65, 165, 253
AluI	AGCT	3 cut(s)	65, 165, 253
Alw21I	GWGCWC	1 cut(s)	255
AoxI	GGCC	2 cut(s)	15, 281
ApoI	RAATTY	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	136
BanII	GRGCYC	2 cut(s)	50, 255
Bbv12I	GWGCWC	1 cut(s)	255
BccI	CCATC	2 cut(s)	4, 241
BisI	GCNGC	2 cut(s)	36, 132
BlsI	GCNGC	2 cut(s)	37, 133
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
BpuEI	CTTGAG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	2 cut(s)	15, 157
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	17, 283
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	256, 284
BsnI	GGCC	2 cut(s)	17, 283
Bsp1286I	GDGCHC	2 cut(s)	50, 255
BspACI	CCGC	5 cut(s)	35, 38, 89, 131, 134
BspANI	GGCC	2 cut(s)	17, 283
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	15, 157
BsuRI	GGCC	2 cut(s)	17, 283
BtsCI	GGATG	2 cut(s)	15, 157
BtsI	GCAGTG	2 cut(s)	125, 222
BtsIMutI	CAGTG	2 cut(s)	125, 222
CviJI	RGCY	9 cut(s)	17, 48, 65, 99, 165, 230, 253, 277, 283
CviKI_1	RGCY	9 cut(s)	17, 48, 65, 99, 165, 230, 253, 277, 283
DdeI	CTNAG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EciI	GGCGGA	2 cut(s)	53, 104
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	2 cut(s)	50, 255
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoT38I	GRGCYC	2 cut(s)	50, 255
FaiI	YATR	3 cut(s)	86, 161, 313
Fnu4HI	GCNGC	2 cut(s)	36, 132
FokI	GGATG	2 cut(s)	22, 164
FriOI	GRGCYC	2 cut(s)	50, 255
Fsp4HI	GCNGC	2 cut(s)	36, 132
GluI	GCNGC	2 cut(s)	36, 132
HaeIII	GGCC	2 cut(s)	17, 283
HapII	CCGG	2 cut(s)	256, 284
HinfI	GANTC	3 cut(s)	77, 170, 209
HpaII	CCGG	2 cut(s)	256, 284
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	174
LmnI	GCTCC	2 cut(s)	250, 258
LpnPI	CCDG	4 cut(s)	31, 269, 277, 297
LweI	GCATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	50, 255
MluCI	AATT	3 cut(s)	183, 295, 305
MlyI	GAGTC	3 cut(s)	71, 179, 218
MnlI	CCTC	4 cut(s)	7, 229, 273, 280
MseI	TTAA	1 cut(s)	108
MspI	CCGG	2 cut(s)	256, 284
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	37, 133
PleI	GAGTC	3 cut(s)	71, 178, 217
PpsI	GAGTC	3 cut(s)	71, 178, 217
Psp124BI	GAGCTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	36, 132
SchI	GAGTC	3 cut(s)	71, 179, 218
SduI	GDGCHC	2 cut(s)	50, 255
SetI	ASST	5 cut(s)	67, 167, 226, 255, 291
SfaNI	GCATC	1 cut(s)	142
SgeI	CNNG	9 cut(s)	30, 61, 78, 112, 126, 268, 276, 291, 296
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	3 cut(s)	183, 295, 305
SsiI	CCGC	5 cut(s)	35, 38, 89, 131, 134
SstI	GAGCTC	1 cut(s)	255
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	183, 295, 305
TauI	GCSGC	2 cut(s)	38, 134
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	125, 222
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	125, 222
XapI	RAATTY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.