Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Forward (+)

37347817 .. 37349849

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCAGACCTTCCCAACCCTCCCTACGATCTCACCATCCTCGGCGCCTCCGGCTTCACCGGAAAGTACGTCGTCAAAGAAGCCTCAATCTCTGGCCTTAGTCGGCCCAACCCCACTAAGCTCTCCCAAACCCTCAACTGGGCCACCGCCCCAAACCCACCTCCCTCCATTCCCATCCTCACCGCCGACACCACCGACCCTCCGATGAAGGCCAGCTATTTCGATAAGGCGGCGGAGAAGGGCTCGTTGGTCATTTCGGCTTGTGCGTTTGACTCTGTTTCGGCTGAGTTTGGGTTGATGTTCAACTCGAGGCAGTGGGTGGGGGCGGCGGTGCCGAATAGGGTGGAGGCTTATCTGAGCTTGGAGTCTGAGAAGAGAAGTGTTGGGAAGTGGGAACTTCGGGACATTCCTGGTCCTCCTCCTCCCAAAGGACCAACTATTGAACACCAGAAAAAGATTGGCCTTTGGGCTGTGAAGCTACCTTCAGCAGATGCTATAGTTGTACGAAGAACACTTGGAGCTCTGACGGAAAATCCCGGCGAAGCCTTCTGGTCATCCGTGAATCCAGCTCATTTCGAGGTGAAGATGGGCACCAAGTCTCTCTTGGGCATTTTTCGGATCATGACATTTTCCGTTGGGAGGTGGCTTCTCTTAAAGTTTCTCTCATTTTTCAGTGTTGGATGGTTCAGGAAGCAGGGTGCCTCCGATGAGGAGGTGAGAAGTGCTTCTTTTAAGATGTATCTTGCTTCTCAGGGAAACAAAAAACCTGATATGGAAATAGTAACAAGGGTTATGGGACCTGAAATTGGCTACTTAACAACCCCGATAATTCTACTTCAGTGTGCACTTATTGTTCTGAGCCAACGCGACAATCTTCCAAAGGGAGGAGTTTTCCCAGCTGGGATTGTATTTGGCCCAACTGATCTCCAAGAAAGGCTACAAGAAAATGGAGTTACTTTTGATGTTATTTCGAAGAATGCTATTTCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

330

Amino Acids

35.98

Weight (kDa)

9.08

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	44, 331, 590, 698
AccII	CGCG	1 cut(s)	867
AciI	CCGC	6 cut(s)	147, 183, 230, 233, 326, 329
AclWI	GGATC	1 cut(s)	626
AcuI	CTGAAG	2 cut(s)	468, 821
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	68, 504
AfiI	CCNNNNNNNGG	6 cut(s)	138, 139, 428, 639, 806, 884
AgsI	TTSAA	2 cut(s)	304, 443
AjnI	CCWGG	1 cut(s)	409
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AluBI	AGCT	7 cut(s)	121, 216, 360, 478, 521, 569, 899
AluI	AGCT	7 cut(s)	121, 216, 360, 478, 521, 569, 899
Alw21I	GWGCWC	2 cut(s)	523, 847
Alw26I	GTCTC	1 cut(s)	603
Alw44I	GTGCAC	1 cut(s)	843
AlwI	GGATC	1 cut(s)	626
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	6 cut(s)	94, 104, 141, 210, 460, 913
ApaLI	GTGCAC	1 cut(s)	843
Asp700I	GAANNNNTTC	1 cut(s)	724
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	6 cut(s)	105, 141, 413, 431, 797, 914
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	5 cut(s)	25, 49, 172, 592, 727
AsuII	TTCGAA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	3 cut(s)	413, 431, 797
BaeGI	GKGCMC	2 cut(s)	593, 847
BanI	GGYRCC	4 cut(s)	44, 331, 590, 698
BanII	GRGCYC	2 cut(s)	245, 523
Bbv12I	GWGCWC	2 cut(s)	523, 847
BccI	CCATC	4 cut(s)	44, 182, 580, 675
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	2 cut(s)	231, 327
BlsI	GCNGC	2 cut(s)	232, 328
Bme1390I	CCNGG	2 cut(s)	411, 537
Bme18I	GGWCC	3 cut(s)	413, 431, 797
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	6 cut(s)	105, 141, 413, 431, 797, 914
BmiI	GGNNCC	5 cut(s)	46, 333, 592, 700, 798
BmrFI	CCNGG	2 cut(s)	411, 537
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu14I	TTCGAA	1 cut(s)	971
BpuMI	CCSGG	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bsc4I	CCNNNNNNNGG	6 cut(s)	138, 139, 428, 639, 806, 884
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	4 cut(s)	36, 174, 554, 686
BseLI	CCNNNNNNNGG	6 cut(s)	138, 139, 428, 639, 806, 884
BseMII	CTCAG	5 cut(s)	276, 347, 360, 764, 848
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	4 cut(s)	408, 411, 725, 900
BseSI	GKGCMC	2 cut(s)	593, 847
BseYI	CCCAGC	2 cut(s)	895, 899
Bsh1236I	CGCG	1 cut(s)	867
BshFI	GGCC	6 cut(s)	96, 106, 143, 212, 462, 915
BshNI	GGYRCC	4 cut(s)	44, 331, 590, 698
BsiHKAI	GWGCWC	2 cut(s)	523, 847
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	51, 60, 537
BslFI	GGGAC	2 cut(s)	416, 810
BslI	CCNNNNNNNGG	6 cut(s)	138, 139, 428, 639, 806, 884
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	416, 810
BsmI	GAATGC	1 cut(s)	982
BsnI	GGCC	6 cut(s)	96, 106, 143, 212, 462, 915
BsoBI	CYCGRG	1 cut(s)	307
Bsp119I	TTCGAA	1 cut(s)	971
Bsp1286I	GDGCHC	4 cut(s)	245, 523, 593, 847
Bsp143I	GATC	3 cut(s)	28, 618, 922
BspACI	CCGC	6 cut(s)	147, 183, 230, 233, 326, 329
BspANI	GGCC	6 cut(s)	96, 106, 143, 212, 462, 915
BspCNI	CTCAG	5 cut(s)	277, 348, 361, 763, 849
BspFNI	CGCG	1 cut(s)	867
BspHI	TCATGA	1 cut(s)	621
BspLI	GGNNCC	5 cut(s)	46, 333, 592, 700, 798
BspPI	GGATC	1 cut(s)	626
BspT104I	TTCGAA	1 cut(s)	971
BspT107I	GGYRCC	4 cut(s)	44, 331, 590, 698
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	28, 618, 922
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	971
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	7 cut(s)	98, 117, 285, 356, 369, 750, 857
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	36, 174, 554, 686
BstFNI	CGCG	1 cut(s)	867
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	31, 621, 925
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	3 cut(s)	28, 618, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	409, 535
BstSFI	CTRYAG	1 cut(s)	495
BstSLI	GKGCMC	2 cut(s)	593, 847
BstUI	CGCG	1 cut(s)	867
BsuRI	GGCC	6 cut(s)	96, 106, 143, 212, 462, 915
BtsCI	GGATG	4 cut(s)	36, 174, 554, 686
BtsI	GCAGTG	1 cut(s)	320
BtsIMutI	CAGTG	3 cut(s)	320, 679, 845
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	621
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	6 cut(s)	105, 141, 413, 431, 797, 914
Csp6I	GTAC	2 cut(s)	67, 503
CviAII	CATG	1 cut(s)	622
CviQI	GTAC	2 cut(s)	67, 503
DdeI	CTNAG	7 cut(s)	98, 117, 285, 356, 369, 750, 857
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	3 cut(s)	30, 620, 924
DpnII	GATC	3 cut(s)	28, 618, 922
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	521
Eco24I	GRGCYC	2 cut(s)	245, 523
Eco47I	GGWCC	3 cut(s)	413, 431, 797
Eco53kI	GAGCTC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	468, 821
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	797
EcoRII	CCWGG	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	245, 523
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	1 cut(s)	625
FaiI	YATR	4 cut(s)	497, 623, 773, 794
FalI	AAGNNNNNCTT	4 cut(s)	587, 619, 712, 744
FaqI	GGGAC	2 cut(s)	416, 810
FatI	CATG	1 cut(s)	621
Fnu4HI	GCNGC	2 cut(s)	231, 327
FokI	GGATG	4 cut(s)	23, 161, 541, 693
FriOI	GRGCYC	2 cut(s)	245, 523
Fsp4HI	GCNGC	2 cut(s)	231, 327
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	231, 327
GsaI	CCCAGC	2 cut(s)	899, 903
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	6 cut(s)	96, 106, 143, 212, 462, 915
HapII	CCGG	3 cut(s)	51, 60, 537
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	272, 365, 562
HpaII	CCGG	3 cut(s)	51, 60, 537
HphI	GGTGA	5 cut(s)	25, 49, 172, 592, 727
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	8 cut(s)	7, 204, 357, 370, 525, 618, 706, 858
Hpy188III	TCNNGA	3 cut(s)	401, 622, 688
Hpy8I	GTNNAC	1 cut(s)	845
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	20, 202, 232, 492, 556
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	7 cut(s)	98, 117, 285, 356, 369, 750, 857
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	3 cut(s)	28, 618, 922
LmnI	GCTCC	1 cut(s)	518
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	2 cut(s)	781, 952
MalI	GATC	3 cut(s)	30, 620, 924
MboI	GATC	3 cut(s)	28, 618, 922
MboII	GAAGA	5 cut(s)	385, 519, 595, 866, 985
MhlI	GDGCHC	4 cut(s)	245, 523, 593, 847
MluCI	AATT	2 cut(s)	804, 828
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	266, 374
MmeI	TCCRAC	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	724
MseI	TTAA	4 cut(s)	653, 732, 815, 991
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	3 cut(s)	51, 60, 537
MspR9I	CCNGG	2 cut(s)	411, 537
Mva1269I	GAATGC	1 cut(s)	982
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	1 cut(s)	867
MwoI	GCNNNNNNNGC	1 cut(s)	51
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	3 cut(s)	28, 618, 922
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	5 cut(s)	46, 333, 592, 700, 798
NmeAIII	GCCGAG	1 cut(s)	21
NspV	TTCGAA	1 cut(s)	971
PaeR7I	CTCGAG	1 cut(s)	307
PagI	TCATGA	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	1 cut(s)	982
PdmI	GAANNNNTTC	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	232, 328
PleI	GAGTC	2 cut(s)	266, 373
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	2 cut(s)	266, 373
PpuMI	RGGWCCY	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	797
Psp6I	CCWGG	1 cut(s)	409
PspFI	CCCAGC	2 cut(s)	895, 899
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	5 cut(s)	46, 333, 592, 700, 798
PspPI	GGNCC	6 cut(s)	105, 141, 413, 431, 797, 914
PspPPI	RGGWCCY	1 cut(s)	797
PspXI	VCTCGAGB	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	2 cut(s)	68, 504
RsaNI	GTAC	2 cut(s)	67, 503
SacI	GAGCTC	1 cut(s)	523
SaqAI	TTAA	4 cut(s)	653, 732, 815, 991
SatI	GCNGC	2 cut(s)	231, 327
Sau3AI	GATC	3 cut(s)	28, 618, 922
Sau96I	GGNCC	6 cut(s)	105, 141, 413, 431, 797, 914
SchI	GAGTC	2 cut(s)	266, 374
ScrFI	CCNGG	2 cut(s)	411, 537
SduI	GDGCHC	4 cut(s)	245, 523, 593, 847
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	307
SfuI	TTCGAA	1 cut(s)	971
SinI	GGWCC	3 cut(s)	413, 431, 797
SlaI	CTCGAG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	2 cut(s)	804, 828
SsiI	CCGC	6 cut(s)	147, 183, 230, 233, 326, 329
SspDI	GGCGCC	1 cut(s)	44
SstI	GAGCTC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	409, 535
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	4 cut(s)	222, 308, 576, 971
TasI	AATT	2 cut(s)	804, 828
TauI	GCSGC	2 cut(s)	233, 329
TfiI	GAWTC	1 cut(s)	562
Tru1I	TTAA	4 cut(s)	653, 732, 815, 991
Tru9I	TTAA	4 cut(s)	653, 732, 815, 991
TscAI	CASTG	3 cut(s)	320, 679, 845
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	3 cut(s)	542, 547, 622
TspRI	CASTG	3 cut(s)	320, 679, 845
VneI	GTGCAC	1 cut(s)	843
VpaK11BI	GGWCC	3 cut(s)	413, 431, 797
XagI	CCTNNNNNAGG	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	2 cut(s)	455, 601
XhoI	CTCGAG	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.