Rmu_sc0002181.1_g000024

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002181.1
Physical Location & Seq
Reverse (-)
59344 .. 61153
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002181.1_g000024.1.cds

Sequence Viewer

Length: 1125 bp
atgtcagacctccccaaccctctctacgatttaatcatcctcggcgcctccggcttcaccggaaagcacgtcgtgaaagaaagcctcaagttcctcaacaccccatcttcacctctcaagtctctagctttagccggccgcaaccccgcaaagctctcccaaactctcaactgggccaccggcccaaacccacgtccctccattcccatcctcaccgccgacaccaccgatcctccgtccctccgccgcctctgctcccagacccgcctcatcctcaactgcgtgggccccttccgcctctacggcgagcccgtcgttgccgcgtgcgttgagaccggctgtgattatctcgacatatgcggagagccggagttcatggagaggatggaggccagttatttcgataaggcggcggagaagggctcgttggtcatttcggcttgtgggttcgactctgttccggcggagtttgggttgatgtttaactcgaggcattgggtgggggcggcagtgccgagtagggtggaggcttatgtgagcttggagtccgagaagagaattgttggcaacttcgggacgtttgagtcggcggtgttgggtgtggctaatgcggataagttgatgaagctccggcggtccagacctaaaaagccgaggccggagattcctgcttctcctccttccaaaggaccaactattgaacaccagaaaaagatcggcctttgggctgtgaagctaccttcagcagattctagcgttgtacgaagaacacttggagctctgaccgaaaatcccggtggtcttccagggaggaatgagagtgatgaacacattaaaaaaagagaagccttctggtcaacagtgaagccagctcatttcgggatgaagataggcaccaagtctctgttgggcatttttcggatcatgacagttggaatttttattgggctcttgggtcagttttcctttgggaggtggcttctcttaaagtatcccccatttttcagtgttggtttgttcaggaagcagggtccctccgatgaggaggtgagaagtgcatcttttaagatgtggtttgttggatctatactcatcccgatatcccaacttagtgaatacaattag

Protein Analysis

374

Amino Acids

40.99

Weight (kDa)

9.43

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
AccB1I GGYRCC 2 cut(s) 44, 893
AccII CGCG 1 cut(s) 323
AclWI GGATC 3 cut(s) 224, 929, 1090
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 936
AcuI CTGAAG 1 cut(s) 726
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 762
AfiI CCNNNNNNNGG 2 cut(s) 686, 972
AgsI TTSAA 1 cut(s) 701
AjiI CACGTC 2 cut(s) 70, 194
AjnI CCWGG 1 cut(s) 805
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 7 cut(s) 128, 154, 540, 628, 736, 779, 872
AluI AGCT 7 cut(s) 128, 154, 540, 628, 736, 779, 872
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 3 cut(s) 126, 326, 906
AlwI GGATC 3 cut(s) 224, 929, 1090
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 7 cut(s) 136, 174, 181, 286, 390, 656, 718
ApaI GGGCCC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 936
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 7 cut(s) 174, 182, 286, 287, 636, 689, 1031
AsuC2I CCSGG 1 cut(s) 795
AsuHPI GGTGA 4 cut(s) 49, 102, 205, 1060
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 3 cut(s) 636, 689, 1031
BaeGI GKGCMC 1 cut(s) 290
BanI GGYRCC 2 cut(s) 44, 893
BanII GRGCYC 5 cut(s) 290, 312, 425, 781, 951
BbsI GAAGAC 1 cut(s) 794
Bbv12I GWGCWC 1 cut(s) 781
BccI CCATC 3 cut(s) 112, 215, 379
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 1 cut(s) 807
BciVI GTATCC 1 cut(s) 1002
BcnI CCSGG 1 cut(s) 795
BcoDI GTCTC 3 cut(s) 126, 326, 906
BfaI CTAG 2 cut(s) 125, 753
BfoI RGCGCY 1 cut(s) 48
BfuI GTATCC 1 cut(s) 1002
BglI GCCNNNNNGGC 1 cut(s) 303
BisI GCNGC 5 cut(s) 139, 247, 321, 411, 507
BlsI GCNGC 5 cut(s) 140, 248, 322, 412, 508
Bme1390I CCNGG 2 cut(s) 795, 807
Bme18I GGWCC 3 cut(s) 636, 689, 1031
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 2 cut(s) 70, 194
BmgT120I GGNCC 7 cut(s) 174, 182, 286, 287, 636, 689, 1031
BmiI GGNNCC 6 cut(s) 46, 288, 289, 895, 1032, 1033
BmrFI CCNGG 2 cut(s) 795, 807
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 1067
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 794
BplI GAGNNNNNCTC 2 cut(s) 407, 439
BpuEI CTTGAG 2 cut(s) 71, 101
BpuMI CCSGG 1 cut(s) 795
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 40, 653, 806
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 686, 972
Bse118I RCCGGY 3 cut(s) 134, 179, 335
Bse1I ACTGG 2 cut(s) 176, 393
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 3 cut(s) 40, 653, 806
BseGI GGATG 6 cut(s) 36, 207, 270, 390, 888, 1092
BseLI CCNNNNNNNGG 2 cut(s) 686, 972
BseNI ACTGG 2 cut(s) 176, 393
BseRI GAGGAG 2 cut(s) 666, 1058
BseSI GKGCMC 1 cut(s) 290
BseX3I CGGCCG 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 323
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 7 cut(s) 138, 176, 183, 288, 392, 658, 720
BshNI GGYRCC 2 cut(s) 44, 893
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 781
BsiHKCI CYCGRG 1 cut(s) 487
BslFI GGGAC 4 cut(s) 180, 223, 589, 1017
BslI CCNNNNNNNGG 2 cut(s) 686, 972
BsmAI GTCTC 3 cut(s) 126, 326, 906
BsmFI GGGAC 4 cut(s) 180, 223, 589, 1017
BsnI GGCC 7 cut(s) 138, 176, 183, 288, 392, 658, 720
Bso31I GGTCTC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 487
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 5 cut(s) 290, 312, 425, 781, 951
Bsp143I GATC 4 cut(s) 229, 714, 921, 1082
BspANI GGCC 7 cut(s) 138, 176, 183, 288, 392, 658, 720
BspFNI CGCG 1 cut(s) 323
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 6 cut(s) 46, 288, 289, 895, 1032, 1033
BspPI GGATC 3 cut(s) 224, 929, 1090
BspT107I GGYRCC 2 cut(s) 44, 893
BspTNI GGTCTC 1 cut(s) 326
BsrFI RCCGGY 3 cut(s) 134, 179, 335
BsrI ACTGG 2 cut(s) 176, 393
BssAI RCCGGY 3 cut(s) 134, 179, 335
BssECI CCNNGG 3 cut(s) 40, 653, 806
BssMI GATC 4 cut(s) 229, 714, 921, 1082
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 2 cut(s) 862, 931
Bst6I CTCTTC 1 cut(s) 548
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 4 cut(s) 136, 308, 325, 870
BstDEI CTNAG 1 cut(s) 1109
BstENI CCTNNNNNAGG 2 cut(s) 684, 970
BstF5I GGATG 6 cut(s) 36, 207, 270, 390, 888, 1092
BstFNI CGCG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 232, 717, 924, 1085
BstMAI GTCTC 3 cut(s) 126, 326, 906
BstMBI GATC 4 cut(s) 229, 714, 921, 1082
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 51, 252, 294, 303
BstNI CCWGG 1 cut(s) 807
BstSCI CCNGG 2 cut(s) 793, 805
BstSLI GKGCMC 1 cut(s) 290
BstUI CGCG 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 794
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
BstZI CGGCCG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 1002
BsuRI GGCC 7 cut(s) 138, 176, 183, 288, 392, 658, 720
BtrI CACGTC 2 cut(s) 70, 194
BtsCI GGATG 6 cut(s) 36, 207, 270, 390, 888, 1092
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 3 cut(s) 516, 867, 1012
Cac8I GCNNGC 4 cut(s) 136, 308, 325, 870
CciI TCATGA 1 cut(s) 924
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 3 cut(s) 134, 179, 335
Cfr13I GGNCC 7 cut(s) 174, 182, 286, 287, 636, 689, 1031
Csp6I GTAC 1 cut(s) 761
CviAII CATG 2 cut(s) 376, 925
CviQI GTAC 1 cut(s) 761
DdeI CTNAG 1 cut(s) 1109
DinI GGCGCC 1 cut(s) 46
DpnI GATC 4 cut(s) 231, 716, 923, 1084
DpnII GATC 4 cut(s) 229, 714, 921, 1082
DraIII CACNNNGTG 1 cut(s) 73
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 548
EarI CTCTTC 1 cut(s) 548
EciI GGCGGA 4 cut(s) 233, 284, 428, 479
Ecl136II GAGCTC 1 cut(s) 779
EclXI CGGCCG 1 cut(s) 136
Eco24I GRGCYC 5 cut(s) 290, 312, 425, 781, 951
Eco31I GGTCTC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 1101
Eco47I GGWCC 3 cut(s) 636, 689, 1031
Eco52I CGGCCG 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 726
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 779
EcoNI CCTNNNNNAGG 2 cut(s) 684, 970
EcoO109I RGGNCCY 2 cut(s) 287, 1031
EcoRII CCWGG 1 cut(s) 805
EcoRV GATATC 1 cut(s) 1101
EcoT38I GRGCYC 5 cut(s) 290, 312, 425, 781, 951
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaeI CATG 2 cut(s) 379, 928
FaiI YATR 6 cut(s) 356, 358, 377, 534, 926, 1088
FalI AAGNNNNNCTT 2 cut(s) 1045, 1077
FaqI GGGAC 4 cut(s) 180, 223, 589, 1017
FatI CATG 2 cut(s) 375, 924
FauI CCCGC 2 cut(s) 154, 272
FauNDI CATATG 1 cut(s) 356
Fnu4HI GCNGC 5 cut(s) 139, 247, 321, 411, 507
FokI GGATG 6 cut(s) 23, 194, 257, 397, 895, 1079
FriOI GRGCYC 5 cut(s) 290, 312, 425, 781, 951
Fsp4HI GCNGC 5 cut(s) 139, 247, 321, 411, 507
FspBI CTAG 2 cut(s) 125, 753
GlaI GCGC 1 cut(s) 46
GluI GCNGC 5 cut(s) 139, 247, 321, 411, 507
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 7 cut(s) 138, 176, 183, 288, 392, 658, 720
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 379, 928
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 858
HindII GTYRAC 1 cut(s) 858
HinfI GANTC 5 cut(s) 452, 545, 584, 664, 749
HphI GGTGA 4 cut(s) 49, 102, 205, 1060
Hpy166II GTNNAC 1 cut(s) 858
Hpy188I TCNGA 5 cut(s) 7, 550, 783, 921, 1039
Hpy188III TCNNGA 8 cut(s) 73, 350, 574, 639, 880, 925, 1021, 1096
Hpy8I GTNNAC 1 cut(s) 858
Hpy99I CGWCG 2 cut(s) 74, 317
HpyAV CCTTC 5 cut(s) 301, 412, 690, 750, 859
HpyCH4III ACNGT 2 cut(s) 862, 931
HpyCH4IV ACGT 3 cut(s) 69, 193, 578
HpyCH4V TGCA 1 cut(s) 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 252, 294, 303
HpyF3I CTNAG 1 cut(s) 1109
HpySE526I ACGT 3 cut(s) 69, 193, 578
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 379, 928
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
KflI GGGWCCC 1 cut(s) 1031
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 229, 714, 921, 1082
LmnI GCTCC 3 cut(s) 260, 633, 776
LweI GCATC 1 cut(s) 1067
MaeI CTAG 2 cut(s) 125, 753
MaeII ACGT 3 cut(s) 69, 193, 578
MalI GATC 4 cut(s) 231, 716, 923, 1084
MboI GATC 4 cut(s) 229, 714, 921, 1082
MboII GAAGA 5 cut(s) 99, 565, 777, 794, 898
MflI RGATCY 1 cut(s) 1082
MhlI GDGCHC 5 cut(s) 290, 312, 425, 781, 951
MluCI AATT 3 cut(s) 558, 936, 1120
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 3 cut(s) 446, 554, 593
MmeI TCCRAC 2 cut(s) 913, 1060
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 5 cut(s) 32, 483, 834, 986, 1065
MspR9I CCNGG 2 cut(s) 795, 807
MvaI CCWGG 1 cut(s) 807
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 51, 252, 294, 303
NaeI GCCGGC 1 cut(s) 136
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 1 cut(s) 795
NdeI CATATG 1 cut(s) 356
NdeII GATC 4 cut(s) 229, 714, 921, 1082
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 379, 928
NlaIV GGNNCC 6 cut(s) 46, 288, 289, 895, 1032, 1033
NmeAIII GCCGAG 3 cut(s) 21, 540, 678
PaeR7I CTCGAG 1 cut(s) 487
PagI TCATGA 1 cut(s) 924
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 664, 749
PkrI GCNGC 5 cut(s) 140, 248, 322, 412, 508
PleI GAGTC 3 cut(s) 446, 553, 592
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 3 cut(s) 446, 553, 592
PpuMI RGGWCCY 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 1 cut(s) 805
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 6 cut(s) 46, 288, 289, 895, 1032, 1033
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 7 cut(s) 174, 182, 286, 287, 636, 689, 1031
PspPPI RGGWCCY 1 cut(s) 1031
PspXI VCTCGAGB 1 cut(s) 487
PsuI RGATCY 1 cut(s) 1082
RsaI GTAC 1 cut(s) 762
RsaNI GTAC 1 cut(s) 761
SacI GAGCTC 1 cut(s) 781
SaqAI TTAA 5 cut(s) 32, 483, 834, 986, 1065
SatI GCNGC 5 cut(s) 139, 247, 321, 411, 507
Sau3AI GATC 4 cut(s) 229, 714, 921, 1082
Sau96I GGNCC 7 cut(s) 174, 182, 286, 287, 636, 689, 1031
SchI GAGTC 3 cut(s) 446, 554, 593
ScrFI CCNGG 2 cut(s) 795, 807
SduI GDGCHC 5 cut(s) 290, 312, 425, 781, 951
SfaNI GCATC 1 cut(s) 1067
SfoI GGCGCC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 487
SinI GGWCC 3 cut(s) 636, 689, 1031
SlaI CTCGAG 1 cut(s) 487
SmlI CTYRAG 3 cut(s) 86, 116, 487
SmoI CTYRAG 3 cut(s) 86, 116, 487
Sse9I AATT 3 cut(s) 558, 936, 1120
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 2 cut(s) 125, 753
SstI GAGCTC 1 cut(s) 781
StyD4I CCNGG 2 cut(s) 793, 805
TaaI ACNGT 2 cut(s) 862, 931
TaiI ACGT 3 cut(s) 72, 196, 581
TaqI TCGA 4 cut(s) 351, 402, 450, 488
TaqII GACCGA 1 cut(s) 800
TasI AATT 3 cut(s) 558, 936, 1120
TauI GCSGC 5 cut(s) 141, 249, 323, 413, 509
TfiI GAWTC 2 cut(s) 664, 749
Tru1I TTAA 5 cut(s) 32, 483, 834, 986, 1065
Tru9I TTAA 5 cut(s) 32, 483, 834, 986, 1065
TscAI CASTG 3 cut(s) 516, 867, 1012
TspDTI ATGAA 4 cut(s) 364, 638, 840, 899
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 3 cut(s) 516, 867, 1012
VpaK11BI GGWCC 3 cut(s) 636, 689, 1031
XagI CCTNNNNNAGG 2 cut(s) 684, 970
XapI RAATTY 1 cut(s) 936
XcmI CCANNNNNNNNNTGG 1 cut(s) 904
XhoI CTCGAG 1 cut(s) 487
XspI CTAG 2 cut(s) 125, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.