Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Forward (+)

7106180 .. 7108325

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCAGACCTCCCCAACCCTCTCTACGATTTCATCATCCTCGGCGCCTCCGGCTTCACTGGAAAGCACGTCGTGAAAGAAAGCCTCAAGTTCCTCAACACCCCATCTTCACCTCTCAAGGACGGCCGCAACCCCGCAAAGCTCTCCCAAACTCTCAACTGGGCCACCGGCCCAAACCCACCTCCCTCCATTCCCATCCTCACCGCCGACGCCACCGATCCTCGGTCCCTCCGCCGCCTCTGCTCCCAGACCCGCCTCATCCTCAACTGCGTGGGCCCCTTCCGCCTCTACGGCGAGCCCGTCGTTGCCGCGTGCGTTGAGACCGGCTGTGATTATCTCGACATATGCGGAGAGCCGGAGTTCATGGAGAGGATGGAGGCCAGTTATTTCGATAAAGCGGCGGAGAAGGGCTCGTTGGTCATTTCGGCTTGTGGGTTCGACTCTGTTCCGGCGGAGTTTGGGTTGATGTTTAACTCGAGGCAGTGGGTGGGGGCGGCAGTGCCGAGTAGGGTGGAGGCTTATGTGAGCTTGGAGTCCGAGAAGAGAATTGTTGGCAACTTCGGGACGTTTGAGTCGGCGGTGTTGGGTGTGGCTAATGCGGATAAGTTGAAGAAGCTCCGGCGGTCCAGACCTAAAAAGCCGAGGCCGGAGATTCCTGCTTCTCCTCCTTCCAAAGGACTGACTATTGAACACCAGAAAAAGATCGGCCTTCGGGCTGTGAAGCTACCTTCAGCAGATTCTACCGTTGTACGAAGAACACTTGGAGTTCTGACCGAAAATCCTGGCGGTCTTCCAGGGAGGAATGAGAGTGATGAACACAATAAAAAAGAGAAGCCTTCTGGTCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

283

Amino Acids

30.73

Weight (kDa)

9.08

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sacchrp_dh_NADP	PF03435	12 - 140	2.3e-10	Saccharopine dehydrogenase NADP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	44
AccII	CGCG	1 cut(s)	311
AclWI	GGATC	1 cut(s)	212
AcoI	YGGCCR	1 cut(s)	124
AcuI	CTGAAG	1 cut(s)	714
AcyI	GRCGYC	2 cut(s)	45, 210
AdeI	CACNNNGTG	1 cut(s)	73
AfaI	GTAC	1 cut(s)	750
AfiI	CCNNNNNNNGG	2 cut(s)	222, 674
AgsI	TTSAA	2 cut(s)	610, 689
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	781, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	4 cut(s)	142, 528, 616, 724
AluI	AGCT	4 cut(s)	142, 528, 616, 724
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	7 cut(s)	124, 162, 169, 274, 378, 644, 706
ApaI	GGGCCC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	6 cut(s)	162, 170, 225, 274, 275, 624
AsuHPI	GGTGA	2 cut(s)	102, 193
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	225, 624
BaeGI	GKGCMC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	44
BanII	GRGCYC	3 cut(s)	278, 300, 413
BbsI	GAAGAC	1 cut(s)	782
BccI	CCATC	3 cut(s)	112, 203, 367
BceAI	ACGGC	2 cut(s)	139, 307
BciT130I	CCWGG	2 cut(s)	783, 795
BcoDI	GTCTC	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	5 cut(s)	127, 235, 309, 399, 495
BlsI	GCNGC	5 cut(s)	128, 236, 310, 400, 496
Bme1390I	CCNGG	2 cut(s)	783, 795
Bme18I	GGWCC	2 cut(s)	225, 624
BmeT110I	CYCGRG	1 cut(s)	475
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	6 cut(s)	162, 170, 225, 274, 275, 624
BmiI	GGNNCC	4 cut(s)	46, 227, 276, 277
BmrFI	CCNGG	2 cut(s)	783, 795
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	782
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpuEI	CTTGAG	2 cut(s)	71, 101
BsaHI	GRCGYC	2 cut(s)	45, 210
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	40, 221, 641, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 674
Bse118I	RCCGGY	2 cut(s)	167, 323
Bse1I	ACTGG	3 cut(s)	64, 164, 381
BseBI	CCWGG	2 cut(s)	783, 795
BseDI	CCNNGG	4 cut(s)	40, 221, 641, 794
BseGI	GGATG	4 cut(s)	36, 195, 258, 378
BseLI	CCNNNNNNNGG	2 cut(s)	222, 674
BseNI	ACTGG	3 cut(s)	64, 164, 381
BseRI	GAGGAG	1 cut(s)	654
BseSI	GKGCMC	1 cut(s)	278
BseX3I	CGGCCG	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	311
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	7 cut(s)	126, 164, 171, 276, 380, 646, 708
BshNI	GGYRCC	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	127
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	7 cut(s)	51, 168, 324, 356, 449, 619, 647
BslFI	GGGAC	2 cut(s)	211, 577
BslI	CCNNNNNNNGG	2 cut(s)	222, 674
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	2 cut(s)	211, 577
BsnI	GGCC	7 cut(s)	126, 164, 171, 276, 380, 646, 708
Bso31I	GGTCTC	1 cut(s)	314
BsoBI	CYCGRG	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	3 cut(s)	278, 300, 413
Bsp143I	GATC	2 cut(s)	217, 702
BspANI	GGCC	7 cut(s)	126, 164, 171, 276, 380, 646, 708
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	4 cut(s)	46, 227, 276, 277
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	314
BsrFI	RCCGGY	2 cut(s)	167, 323
BsrI	ACTGG	3 cut(s)	64, 164, 381
BssAI	RCCGGY	2 cut(s)	167, 323
BssECI	CCNNGG	4 cut(s)	40, 221, 641, 794
BssMI	GATC	2 cut(s)	217, 702
BssNI	GRCGYC	2 cut(s)	45, 210
Bst2UI	CCWGG	2 cut(s)	783, 795
Bst4CI	ACNGT	2 cut(s)	745, 849
Bst6I	CTCTTC	1 cut(s)	536
BstACI	GRCGYC	2 cut(s)	45, 210
BstC8I	GCNNGC	2 cut(s)	296, 313
BstENI	CCTNNNNNAGG	1 cut(s)	672
BstF5I	GGATG	4 cut(s)	36, 195, 258, 378
BstFNI	CGCG	1 cut(s)	311
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	220, 705
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	217, 702
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 240, 282, 291
BstNI	CCWGG	2 cut(s)	783, 795
BstSCI	CCNGG	2 cut(s)	781, 793
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	782
BstZI	CGGCCG	1 cut(s)	124
BsuRI	GGCC	7 cut(s)	126, 164, 171, 276, 380, 646, 708
BtrI	CACGTC	1 cut(s)	70
BtsCI	GGATG	4 cut(s)	36, 195, 258, 378
BtsI	GCAGTG	2 cut(s)	488, 504
BtsIMutI	CAGTG	3 cut(s)	57, 488, 504
Cac8I	GCNNGC	2 cut(s)	296, 313
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	2 cut(s)	167, 323
Cfr13I	GGNCC	6 cut(s)	162, 170, 225, 274, 275, 624
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	749
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	1 cut(s)	749
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	2 cut(s)	219, 704
DpnII	GATC	2 cut(s)	217, 702
DraIII	CACNNNGTG	1 cut(s)	73
DrdI	GACNNNNNNGTC	1 cut(s)	571
DseDI	GACNNNNNNGTC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	124
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
EciI	GGCGGA	4 cut(s)	221, 272, 416, 467
EclXI	CGGCCG	1 cut(s)	124
Eco24I	GRGCYC	3 cut(s)	278, 300, 413
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	2 cut(s)	225, 624
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	714
Eco88I	CYCGRG	1 cut(s)	475
EcoNI	CCTNNNNNAGG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	781, 793
EcoT38I	GRGCYC	3 cut(s)	278, 300, 413
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	1 cut(s)	367
FaiI	YATR	4 cut(s)	344, 346, 365, 522
FaqI	GGGAC	2 cut(s)	211, 577
FatI	CATG	1 cut(s)	363
FauI	CCCGC	2 cut(s)	142, 260
FauNDI	CATATG	1 cut(s)	344
Fnu4HI	GCNGC	5 cut(s)	127, 235, 309, 399, 495
FokI	GGATG	4 cut(s)	23, 182, 245, 385
FriOI	GRGCYC	3 cut(s)	278, 300, 413
Fsp4HI	GCNGC	5 cut(s)	127, 235, 309, 399, 495
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	5 cut(s)	127, 235, 309, 399, 495
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	7 cut(s)	126, 164, 171, 276, 380, 646, 708
HapII	CCGG	7 cut(s)	51, 168, 324, 356, 449, 619, 647
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	45, 210
Hin1II	CATG	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	845
HindII	GTYRAC	1 cut(s)	845
HinfI	GANTC	5 cut(s)	440, 533, 572, 652, 737
HpaII	CCGG	7 cut(s)	51, 168, 324, 356, 449, 619, 647
HphI	GGTGA	2 cut(s)	102, 193
Hpy166II	GTNNAC	1 cut(s)	845
Hpy188I	TCNGA	3 cut(s)	7, 538, 771
Hpy188III	TCNNGA	4 cut(s)	73, 338, 562, 627
Hpy8I	GTNNAC	1 cut(s)	845
Hpy99I	CGWCG	3 cut(s)	74, 212, 305
HpyAV	CCTTC	6 cut(s)	289, 400, 678, 719, 738, 846
HpyCH4III	ACNGT	2 cut(s)	745, 849
HpyCH4IV	ACGT	2 cut(s)	69, 566
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 240, 282, 291
HpySE526I	ACGT	2 cut(s)	69, 566
Hsp92I	GRCGYC	2 cut(s)	45, 210
Hsp92II	CATG	1 cut(s)	367
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	217, 702
LmnI	GCTCC	2 cut(s)	248, 621
MaeII	ACGT	2 cut(s)	69, 566
MalI	GATC	2 cut(s)	219, 704
MboI	GATC	2 cut(s)	217, 702
MboII	GAAGA	5 cut(s)	99, 553, 622, 765, 782
MhlI	GDGCHC	3 cut(s)	278, 300, 413
MluCI	AATT	1 cut(s)	546
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	434, 542, 581
MseI	TTAA	1 cut(s)	471
MspI	CCGG	7 cut(s)	51, 168, 324, 356, 449, 619, 647
MspR9I	CCNGG	2 cut(s)	783, 795
MvaI	CCWGG	2 cut(s)	783, 795
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	4 cut(s)	51, 240, 282, 291
NarI	GGCGCC	1 cut(s)	45
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	2 cut(s)	217, 702
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	4 cut(s)	46, 227, 276, 277
NmeAIII	GCCGAG	3 cut(s)	21, 528, 666
PaeR7I	CTCGAG	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	652, 737
PkrI	GCNGC	5 cut(s)	128, 236, 310, 400, 496
PleI	GAGTC	3 cut(s)	434, 541, 580
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	434, 541, 580
Psp6I	CCWGG	2 cut(s)	781, 793
PspGI	CCWGG	2 cut(s)	781, 793
PspN4I	GGNNCC	4 cut(s)	46, 227, 276, 277
PspOMI	GGGCCC	1 cut(s)	274
PspPI	GGNCC	6 cut(s)	162, 170, 225, 274, 275, 624
PspXI	VCTCGAGB	1 cut(s)	475
RsaI	GTAC	1 cut(s)	750
RsaNI	GTAC	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	5 cut(s)	127, 235, 309, 399, 495
Sau3AI	GATC	2 cut(s)	217, 702
Sau96I	GGNCC	6 cut(s)	162, 170, 225, 274, 275, 624
SchI	GAGTC	3 cut(s)	434, 542, 581
ScrFI	CCNGG	2 cut(s)	783, 795
SduI	GDGCHC	3 cut(s)	278, 300, 413
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	475
SinI	GGWCC	2 cut(s)	225, 624
SlaI	CTCGAG	1 cut(s)	475
SmlI	CTYRAG	3 cut(s)	86, 116, 475
SmoI	CTYRAG	3 cut(s)	86, 116, 475
Sse9I	AATT	1 cut(s)	546
SspDI	GGCGCC	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	781, 793
TaaI	ACNGT	2 cut(s)	745, 849
TaiI	ACGT	2 cut(s)	72, 569
TaqI	TCGA	4 cut(s)	339, 390, 438, 476
TaqII	GACCGA	2 cut(s)	213, 788
TasI	AATT	1 cut(s)	546
TauI	GCSGC	5 cut(s)	129, 237, 311, 401, 497
TfiI	GAWTC	2 cut(s)	652, 737
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	3 cut(s)	64, 488, 504
TspDTI	ATGAA	3 cut(s)	22, 352, 828
TspRI	CASTG	3 cut(s)	64, 488, 504
VpaK11BI	GGWCC	2 cut(s)	225, 624
XagI	CCTNNNNNAGG	1 cut(s)	672
XhoI	CTCGAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.