Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Reverse (-)

77089383 .. 77089955

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021664

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAGGCCAGTTATTTCGATAAGGCGGCGGAGAAGGGCTCGTTGGCCATTTCGGCTTGTGGGTTCGACTCTGTTCCGGCGGAGTTTGGATTGATGTTCAACTCGAGGCAGTGGGTGGGGGCGGTGGTGCCGAATAGGGTGGAGGCTTATCTGAGCTTGGAGTCTGATAAGAGAATTGTTGGGAACTTCGGGACGTTTGAGTCGGCGGTGTTGGGTGTGGCTAATGCGGATAAGTTGATGGAGCTCCGGCGGTCCAGGCCTAAAAAACCGAGGCCGGAGATTCCTGGTCCTCCTCCTTCTAAAGGACCAACCATTGAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

108

Amino Acids

11.62

Weight (kDa)

7.87

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	127
AciI	CCGC	7 cut(s)	26, 29, 80, 122, 206, 227, 250
AcoI	YGGCCR	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	100, 317
AjnI	CCWGG	2 cut(s)	254, 283
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	156, 244
AluI	AGCT	2 cut(s)	156, 244
Alw21I	GWGCWC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	4 cut(s)	6, 45, 257, 272
AspS9I	GGNCC	3 cut(s)	252, 287, 305
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	3 cut(s)	252, 287, 305
BalI	TGGCCA	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	41, 246
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	2 cut(s)	256, 285
BfaI	CTAG	1 cut(s)	322
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	256, 285
Bme18I	GGWCC	3 cut(s)	252, 287, 305
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	252, 287, 305
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	256, 285
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BsaJI	CCNNGG	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	9
BseBI	CCWGG	2 cut(s)	256, 285
BseDI	CCNNGG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	9
BseRI	GAGGAG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	8, 47, 259, 274
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	3 cut(s)	77, 247, 275
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	8, 47, 259, 274
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	41, 246
BspACI	CCGC	7 cut(s)	26, 29, 80, 122, 206, 227, 250
BspANI	GGCC	4 cut(s)	8, 47, 259, 274
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	269
Bst2UI	CCWGG	2 cut(s)	256, 285
BstDEI	CTNAG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 256
BstNI	CCWGG	2 cut(s)	256, 285
BstSCI	CCNGG	2 cut(s)	254, 283
BsuRI	GGCC	4 cut(s)	8, 47, 259, 274
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	252, 287, 305
DdeI	CTNAG	1 cut(s)	152
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	45
EciI	GGCGGA	2 cut(s)	44, 95
Ecl136II	GAGCTC	1 cut(s)	244
Eco147I	AGGCCT	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	41, 246
Eco47I	GGWCC	3 cut(s)	252, 287, 305
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	103
EcoICRI	GAGCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	254, 283
EcoT38I	GRGCYC	2 cut(s)	41, 246
FaqI	GGGAC	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	27
FriOI	GRGCYC	2 cut(s)	41, 246
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	322
GluI	GCNGC	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	8, 47, 259, 274
HapII	CCGG	3 cut(s)	77, 247, 275
HinfI	GANTC	4 cut(s)	68, 161, 200, 280
HpaII	CCGG	3 cut(s)	77, 247, 275
Hpy188I	TCNGA	2 cut(s)	153, 166
Hpy188III	TCNNGA	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	28, 306
HpyCH4IV	ACGT	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 256
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	194
LmnI	GCTCC	2 cut(s)	241, 249
LpnPI	CCDG	8 cut(s)	22, 90, 241, 260, 268, 270, 288, 297
MaeI	CTAG	1 cut(s)	322
MaeII	ACGT	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	41, 246
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	174
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	3 cut(s)	62, 170, 209
MnlI	CCTC	5 cut(s)	99, 136, 264, 300, 303
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	3 cut(s)	77, 247, 275
MspR9I	CCNGG	2 cut(s)	256, 285
MvaI	CCWGG	2 cut(s)	256, 285
MwoI	GCNNNNNNNGC	2 cut(s)	53, 256
NlaIV	GGNNCC	1 cut(s)	129
PaeR7I	CTCGAG	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	3 cut(s)	62, 169, 208
PpsI	GAGTC	3 cut(s)	62, 169, 208
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	254, 283
PspGI	CCWGG	2 cut(s)	254, 283
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	3 cut(s)	252, 287, 305
PspXI	VCTCGAGB	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	246
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	3 cut(s)	252, 287, 305
SchI	GAGTC	3 cut(s)	62, 170, 209
ScrFI	CCNGG	2 cut(s)	256, 285
SduI	GDGCHC	2 cut(s)	41, 246
SetI	ASST	3 cut(s)	158, 197, 246
Sfr274I	CTCGAG	1 cut(s)	103
SinI	GGWCC	3 cut(s)	252, 287, 305
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	174
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	7 cut(s)	26, 29, 80, 122, 206, 227, 250
SspMI	CTAG	1 cut(s)	322
SstI	GAGCTC	1 cut(s)	246
StuI	AGGCCT	1 cut(s)	259
StyD4I	CCNGG	2 cut(s)	254, 283
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	18, 66, 104
TasI	AATT	1 cut(s)	174
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	1 cut(s)	116
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	3 cut(s)	252, 287, 305
XagI	CCTNNNNNAGG	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	103
XspI	CTAG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.