Rw2G049300

mitochondrial saccharopine dehydrogenase-like oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
76830990 .. 76833030
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049300.1

Sequence Viewer

Length: 1317 bp
ATGTCAGACCTCCCCAACCCTCTCTACGATTTCATCATCCTCGGCGCCTCCGGCTTCACCGGAAAGCACGTCGTGAAAGAAAGCCTCAAGTTCCTCAACACCCCATCTTCACCTCTCAAGTCTCTAGCTTTAGCCGGCCGCAACCCCGCAAAGCTCTCCCAAACTCTCAACTGGGCCACCGGCCCAAACCCACGTCCCTCCATTCCCATCCTCACCGCCGACACCACCGATCCTCCGTCCCTCCGCCGCCTCTGCTCCCAGACCCGCCTCATCCTCAACTGCGTGGGCCCCTTCCGCCTCTACGGCGAGCCCGTCGTTGCCGCGTGCCCGGAGTTCATGGAGAGGATGGAGGCCAGTTATTTCGATAAAGCGGCGGAGAAGGGCTCGTTGGTCATTTCGGCTTGTGGGTTCGACTCTGTTCCGGCGGAGTTTGGGTTGATGTTTAACTCGAGGCAGTGGGTGGGGGCAGCAGTGCCGAGTAGGGTCGAGGCTTATGTGAGCTTGGAGTCCGAGAAGAGAATTGTTGGCAACTTCGGGACGTTTGAGTCGGCGGTGTTGGGTGTGGCTAATGCTGATAAGTTGAAGAAGCTCCGGCGGTCCAGACCTAAAAAGCCGAGGCCGGAGATTCCTGCTTCTCCTCCTTCCAAAGGACCAACTATTGAACACCAGAAAAAGATCGGCCTTTGGGCTGTGAAGCTACCTTCAGCAGATTCTACCGTTGTACGAAGAACACTTGGAGCTCTGACCGAAAATCCCGGTGGTCTTCCAGGGAGGAATGAGAGTGATGAACACATTAAAAAAAGAGAAGCCTTCTGGTCAACAGTGAAGCCAGCTCATTTCGGGATGAAGATAGGCACCAAGTCTCTGTTGGGCATTTTTCGGATCATGACAGTTGGAATTTTTATTGGGCTCTTGGGTCAGTTTTCCTTTGGGAGGTGGCTTCTCTTAAAGTATCCCCCATTTTTCAGTGTTGGATTGTTCAGGAAGCAGGGTCCCTCCGATGAGGAGGTGAGAAGTGCATCTTTTAAGATGTGGTTTGTTGGATGTGGTTTCAGCGACAGGAGTCTTGCTTCTCAGGGAAACAGAAAACCTGATATGGAAATAGTAACAAGAGTTATGGGACCTGAAGTTGGCTACATAACAACCCCGATAATTCTACTTCAGTGTGCACTTACTGTTCTGAGCCAACGCGACAATCTTCCAAAGGGAGGAGTTCTCCCACCTGGGATTGTATTTGGCCCAACTGATCTCCAAGAAAAGCTACAAGAAAATGGAATTACTTTTGATGTTATTTCAAAGAATGTTATTTCTCATTAA

Protein Analysis

438

Amino Acids

47.88

Weight (kDa)

9.66

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 544
AccB1I GGYRCC 2 cut(s) 44, 854
AccII CGCG 2 cut(s) 323, 1191
AclWI GGATC 2 cut(s) 224, 890
AcoI YGGCCR 1 cut(s) 136
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 3 cut(s) 687, 1145, 1146
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 4 cut(s) 647, 933, 1130, 1208
AgsI TTSAA 3 cut(s) 583, 662, 1296
AjiI CACGTC 2 cut(s) 70, 194
AjnI CCWGG 2 cut(s) 766, 1222
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 8 cut(s) 128, 154, 501, 589, 697, 740, 833, 1261
AluI AGCT 8 cut(s) 128, 154, 501, 589, 697, 740, 833, 1261
Alw21I GWGCWC 2 cut(s) 742, 1171
Alw26I GTCTC 2 cut(s) 126, 867
Alw44I GTGCAC 1 cut(s) 1167
AlwI GGATC 2 cut(s) 224, 890
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 8 cut(s) 136, 174, 181, 286, 351, 617, 679, 1237
ApaI GGGCCC 1 cut(s) 290
ApaLI GTGCAC 1 cut(s) 1167
ApeKI GCWGC 1 cut(s) 467
ApoI RAATTY 1 cut(s) 897
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 9 cut(s) 174, 182, 286, 287, 597, 650, 992, 1121, 1238
AsuC2I CCSGG 2 cut(s) 329, 756
AsuHPI GGTGA 4 cut(s) 49, 102, 205, 1021
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 4 cut(s) 597, 650, 992, 1121
BaeGI GKGCMC 3 cut(s) 290, 329, 1171
BanI GGYRCC 2 cut(s) 44, 854
BanII GRGCYC 5 cut(s) 290, 312, 386, 742, 912
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 2 cut(s) 742, 1171
BbvI GCAGC 1 cut(s) 479
BccI CCATC 3 cut(s) 112, 215, 340
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 2 cut(s) 768, 1224
BciVI GTATCC 1 cut(s) 963
BcnI CCSGG 2 cut(s) 329, 756
BcoDI GTCTC 2 cut(s) 126, 867
BfaI CTAG 1 cut(s) 125
BfoI RGCGCY 1 cut(s) 48
BfuI GTATCC 1 cut(s) 963
BglI GCCNNNNNGGC 1 cut(s) 303
BisI GCNGC 5 cut(s) 139, 247, 321, 372, 468
BlsI GCNGC 5 cut(s) 140, 248, 322, 373, 469
Bme1390I CCNGG 4 cut(s) 329, 756, 768, 1224
Bme18I GGWCC 4 cut(s) 597, 650, 992, 1121
BmeT110I CYCGRG 1 cut(s) 448
BmgBI CACGTC 2 cut(s) 70, 194
BmgT120I GGNCC 9 cut(s) 174, 182, 286, 287, 597, 650, 992, 1121, 1238
BmiI GGNNCC 7 cut(s) 46, 288, 289, 856, 993, 994, 1122
BmrFI CCNGG 4 cut(s) 329, 756, 768, 1224
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 1028
BmuI ACTGGG 1 cut(s) 181
BoxI GACNNNNGTC 1 cut(s) 1062
BpiI GAAGAC 1 cut(s) 755
BplI GAGNNNNNCTC 4 cut(s) 368, 400, 1200, 1232
BpuEI CTTGAG 2 cut(s) 71, 101
BpuMI CCSGG 2 cut(s) 329, 756
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 4 cut(s) 40, 614, 767, 1223
BsaWI WCCGGW 1 cut(s) 59
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 419, 449
Bsc4I CCNNNNNNNGG 4 cut(s) 647, 933, 1130, 1208
Bse118I RCCGGY 2 cut(s) 134, 179
Bse1I ACTGG 2 cut(s) 176, 354
BseBI CCWGG 2 cut(s) 768, 1224
BseDI CCNNGG 4 cut(s) 40, 614, 767, 1223
BseGI GGATG 6 cut(s) 36, 207, 270, 351, 849, 1049
BseLI CCNNNNNNNGG 4 cut(s) 647, 933, 1130, 1208
BseMII CTCAG 2 cut(s) 1088, 1172
BseNI ACTGG 2 cut(s) 176, 354
BseRI GAGGAG 3 cut(s) 627, 1019, 1224
BseSI GKGCMC 3 cut(s) 290, 329, 1171
BseX3I CGGCCG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 479
Bsh1236I CGCG 2 cut(s) 323, 1191
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 8 cut(s) 138, 176, 183, 288, 353, 619, 681, 1239
BshNI GGYRCC 2 cut(s) 44, 854
BsiEI CGRYCG 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 742, 1171
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 9 cut(s) 51, 60, 135, 180, 329, 422, 592, 620, 756
BslFI GGGAC 5 cut(s) 180, 223, 550, 978, 1134
BslI CCNNNNNNNGG 4 cut(s) 647, 933, 1130, 1208
BsmAI GTCTC 2 cut(s) 126, 867
BsmFI GGGAC 5 cut(s) 180, 223, 550, 978, 1134
BsnI GGCC 8 cut(s) 138, 176, 183, 288, 353, 619, 681, 1239
BsoBI CYCGRG 1 cut(s) 448
Bsp120I GGGCCC 1 cut(s) 286
Bsp1286I GDGCHC 7 cut(s) 290, 312, 329, 386, 742, 912, 1171
Bsp143I GATC 4 cut(s) 229, 675, 882, 1246
BspANI GGCC 8 cut(s) 138, 176, 183, 288, 353, 619, 681, 1239
BspCNI CTCAG 2 cut(s) 1087, 1173
BspFNI CGCG 2 cut(s) 323, 1191
BspHI TCATGA 1 cut(s) 885
BspLI GGNNCC 7 cut(s) 46, 288, 289, 856, 993, 994, 1122
BspPI GGATC 2 cut(s) 224, 890
BspT107I GGYRCC 2 cut(s) 44, 854
BsrFI RCCGGY 2 cut(s) 134, 179
BsrI ACTGG 2 cut(s) 176, 354
BssAI RCCGGY 2 cut(s) 134, 179
BssECI CCNNGG 4 cut(s) 40, 614, 767, 1223
BssMI GATC 4 cut(s) 229, 675, 882, 1246
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 768, 1224
Bst4CI ACNGT 4 cut(s) 718, 823, 892, 1177
Bst6I CTCTTC 1 cut(s) 509
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 4 cut(s) 136, 308, 325, 831
BstDEI CTNAG 2 cut(s) 1074, 1181
BstENI CCTNNNNNAGG 2 cut(s) 645, 931
BstF5I GGATG 6 cut(s) 36, 207, 270, 351, 849, 1049
BstFNI CGCG 2 cut(s) 323, 1191
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 4 cut(s) 232, 678, 885, 1249
BstMAI GTCTC 2 cut(s) 126, 867
BstMBI GATC 4 cut(s) 229, 675, 882, 1246
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 4 cut(s) 51, 252, 294, 303
BstNI CCWGG 2 cut(s) 768, 1224
BstPAI GACNNNNGTC 1 cut(s) 1062
BstSCI CCNGG 4 cut(s) 327, 754, 766, 1222
BstSLI GKGCMC 3 cut(s) 290, 329, 1171
BstUI CGCG 2 cut(s) 323, 1191
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 755
BstZI CGGCCG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 963
BsuRI GGCC 8 cut(s) 138, 176, 183, 288, 353, 619, 681, 1239
BtrI CACGTC 2 cut(s) 70, 194
BtsCI GGATG 6 cut(s) 36, 207, 270, 351, 849, 1049
BtsI GCAGTG 2 cut(s) 461, 477
BtsIMutI CAGTG 5 cut(s) 461, 477, 828, 973, 1169
Cac8I GCNNGC 4 cut(s) 136, 308, 325, 831
CciI TCATGA 1 cut(s) 885
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 2 cut(s) 134, 179
Cfr13I GGNCC 9 cut(s) 174, 182, 286, 287, 597, 650, 992, 1121, 1238
Csp6I GTAC 1 cut(s) 722
CviAII CATG 2 cut(s) 337, 886
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 2 cut(s) 1074, 1181
DinI GGCGCC 1 cut(s) 46
DpnI GATC 4 cut(s) 231, 677, 884, 1248
DpnII GATC 4 cut(s) 229, 675, 882, 1246
DraIII CACNNNGTG 1 cut(s) 73
DrdI GACNNNNNNGTC 1 cut(s) 544
DseDI GACNNNNNNGTC 1 cut(s) 544
EaeI YGGCCR 1 cut(s) 136
EagI CGGCCG 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 509
EarI CTCTTC 1 cut(s) 509
EciI GGCGGA 4 cut(s) 233, 284, 389, 440
Ecl136II GAGCTC 1 cut(s) 740
EclXI CGGCCG 1 cut(s) 136
Eco24I GRGCYC 5 cut(s) 290, 312, 386, 742, 912
Eco47I GGWCC 4 cut(s) 597, 650, 992, 1121
Eco52I CGGCCG 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 740
Eco57I CTGAAG 3 cut(s) 687, 1145, 1146
Eco88I CYCGRG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 740
EcoNI CCTNNNNNAGG 2 cut(s) 645, 931
EcoO109I RGGNCCY 3 cut(s) 287, 992, 1121
EcoRII CCWGG 2 cut(s) 766, 1222
EcoT38I GRGCYC 5 cut(s) 290, 312, 386, 742, 912
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaeI CATG 2 cut(s) 340, 889
FaiI YATR 6 cut(s) 338, 495, 887, 1097, 1118, 1139
FalI AAGNNNNNCTT 2 cut(s) 1006, 1038
FaqI GGGAC 5 cut(s) 180, 223, 550, 978, 1134
FatI CATG 2 cut(s) 336, 885
FauI CCCGC 2 cut(s) 154, 272
Fnu4HI GCNGC 5 cut(s) 139, 247, 321, 372, 468
FokI GGATG 6 cut(s) 23, 194, 257, 358, 856, 1056
FriOI GRGCYC 5 cut(s) 290, 312, 386, 742, 912
Fsp4HI GCNGC 5 cut(s) 139, 247, 321, 372, 468
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 46
GluI GCNGC 5 cut(s) 139, 247, 321, 372, 468
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 8 cut(s) 138, 176, 183, 288, 353, 619, 681, 1239
HapII CCGG 9 cut(s) 51, 60, 135, 180, 329, 422, 592, 620, 756
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 340, 889
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HinfI GANTC 6 cut(s) 413, 506, 545, 625, 710, 1063
HpaII CCGG 9 cut(s) 51, 60, 135, 180, 329, 422, 592, 620, 756
HphI GGTGA 4 cut(s) 49, 102, 205, 1021
Hpy166II GTNNAC 2 cut(s) 819, 1169
Hpy188I TCNGA 6 cut(s) 7, 511, 744, 882, 1000, 1182
Hpy188III TCNNGA 6 cut(s) 73, 535, 600, 841, 886, 982
Hpy8I GTNNAC 2 cut(s) 819, 1169
Hpy99I CGWCG 2 cut(s) 74, 317
HpyAV CCTTC 5 cut(s) 301, 373, 651, 711, 820
HpyCH4III ACNGT 4 cut(s) 718, 823, 892, 1177
HpyCH4IV ACGT 3 cut(s) 69, 193, 539
HpyCH4V TGCA 2 cut(s) 1019, 1169
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 252, 294, 303
HpyF3I CTNAG 2 cut(s) 1074, 1181
HpySE526I ACGT 3 cut(s) 69, 193, 539
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 340, 889
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
KflI GGGWCCC 1 cut(s) 992
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 4 cut(s) 229, 675, 882, 1246
LmnI GCTCC 3 cut(s) 260, 594, 737
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 1 cut(s) 1028
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 69, 193, 539
MaeIII GTNAC 1 cut(s) 1105
MalI GATC 4 cut(s) 231, 677, 884, 1248
MboI GATC 4 cut(s) 229, 675, 882, 1246
MboII GAAGA 7 cut(s) 99, 526, 595, 738, 755, 859, 1190
MhlI GDGCHC 7 cut(s) 290, 312, 329, 386, 742, 912, 1171
MluCI AATT 4 cut(s) 519, 897, 1152, 1275
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 4 cut(s) 407, 515, 554, 1072
MmeI TCCRAC 3 cut(s) 874, 952, 1021
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 5 cut(s) 444, 795, 947, 1026, 1315
MspI CCGG 9 cut(s) 51, 60, 135, 180, 329, 422, 592, 620, 756
MspR9I CCNGG 4 cut(s) 329, 756, 768, 1224
MvaI CCWGG 2 cut(s) 768, 1224
MvnI CGCG 2 cut(s) 323, 1191
MwoI GCNNNNNNNGC 4 cut(s) 51, 252, 294, 303
NaeI GCCGGC 1 cut(s) 136
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 2 cut(s) 329, 756
NdeII GATC 4 cut(s) 229, 675, 882, 1246
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 340, 889
NlaIV GGNNCC 7 cut(s) 46, 288, 289, 856, 993, 994, 1122
NmeAIII GCCGAG 3 cut(s) 21, 501, 639
PaeR7I CTCGAG 1 cut(s) 448
PagI TCATGA 1 cut(s) 885
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 625, 710
PkrI GCNGC 5 cut(s) 140, 248, 322, 373, 469
PleI GAGTC 4 cut(s) 407, 514, 553, 1071
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 4 cut(s) 407, 514, 553, 1071
PpuMI RGGWCCY 2 cut(s) 992, 1121
PshAI GACNNNNGTC 1 cut(s) 1062
Psp124BI GAGCTC 1 cut(s) 742
Psp5II RGGWCCY 2 cut(s) 992, 1121
Psp6I CCWGG 2 cut(s) 766, 1222
PspGI CCWGG 2 cut(s) 766, 1222
PspN4I GGNNCC 7 cut(s) 46, 288, 289, 856, 993, 994, 1122
PspOMI GGGCCC 1 cut(s) 286
PspPI GGNCC 9 cut(s) 174, 182, 286, 287, 597, 650, 992, 1121, 1238
PspPPI RGGWCCY 2 cut(s) 992, 1121
PspXI VCTCGAGB 1 cut(s) 448
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
SacI GAGCTC 1 cut(s) 742
SaqAI TTAA 5 cut(s) 444, 795, 947, 1026, 1315
SatI GCNGC 5 cut(s) 139, 247, 321, 372, 468
Sau3AI GATC 4 cut(s) 229, 675, 882, 1246
Sau96I GGNCC 9 cut(s) 174, 182, 286, 287, 597, 650, 992, 1121, 1238
SchI GAGTC 4 cut(s) 407, 515, 554, 1072
ScrFI CCNGG 4 cut(s) 329, 756, 768, 1224
SduI GDGCHC 7 cut(s) 290, 312, 329, 386, 742, 912, 1171
SfaNI GCATC 1 cut(s) 1028
SfoI GGCGCC 1 cut(s) 46
Sfr274I CTCGAG 1 cut(s) 448
SinI GGWCC 4 cut(s) 597, 650, 992, 1121
SlaI CTCGAG 1 cut(s) 448
SmlI CTYRAG 3 cut(s) 86, 116, 448
SmoI CTYRAG 3 cut(s) 86, 116, 448
Sse9I AATT 4 cut(s) 519, 897, 1152, 1275
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 742
StyD4I CCNGG 4 cut(s) 327, 754, 766, 1222
TaaI ACNGT 4 cut(s) 718, 823, 892, 1177
TaiI ACGT 3 cut(s) 72, 196, 542
TaqI TCGA 4 cut(s) 363, 411, 449, 486
TaqII GACCGA 1 cut(s) 761
TasI AATT 4 cut(s) 519, 897, 1152, 1275
TauI GCSGC 4 cut(s) 141, 249, 323, 374
TfiI GAWTC 2 cut(s) 625, 710
Tru1I TTAA 5 cut(s) 444, 795, 947, 1026, 1315
Tru9I TTAA 5 cut(s) 444, 795, 947, 1026, 1315
TscAI CASTG 5 cut(s) 461, 477, 828, 973, 1169
TseI GCWGC 1 cut(s) 467
TspDTI ATGAA 4 cut(s) 22, 325, 801, 860
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 5 cut(s) 461, 477, 828, 973, 1169
VneI GTGCAC 1 cut(s) 1167
VpaK11BI GGWCC 4 cut(s) 597, 650, 992, 1121
XagI CCTNNNNNAGG 2 cut(s) 645, 931
XapI RAATTY 1 cut(s) 897
XcmI CCANNNNNNNNNTGG 1 cut(s) 865
XhoI CTCGAG 1 cut(s) 448
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.