Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000949.1

Orthogroup ID

OG0002135

Physical Location & Seq

Genomic Coordinates Forward (+)

26886 .. 28460

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000949.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgtcagacctcccccaccctccctacgatctcatcatcctcggcgcctccggcttcaccggaaaatacgtcgtgaaagaagccctcaagttcctcaaccccccctcctcacctctcaagtctctagccttagccggccgcaaccccacgaagctcttccaaaccctcaactgggccaccgccccaatcccacctccctccattcccatcctccccgccgacaccaccgatcccccgtccctccgccgcctctgctcccagacccgcctcatcctcaactgcgtgggccccttccgcctctacggcgaccccgtcgtcgccgcgtgcgttgagaccggctgtgattatctcgacatatccggagagccggagttcatggagaggatggaggccagttatttcgataagacggcggagaagggctcgttggtcatttcggcttgtgggtttgactctgttccggcggagtttggattgatgttcaactcgaggcagtgggtgggggcggcggtgccgaatagggtggaggcttatctgagcttggagtctgataagagaattgttgggaacttcgggacgtttgagtcggcggtgttgggtgtggctaatgcggatcagttgatggagctccggcggtccaggcctaaaaaaccgaggccggagattcctggtcctcctccttctaaaggaccaaccattgaacaccagaaaaagattggcctttgggctgtgaagctaccttcagcagatgctatcgttgtacgaagaacacttggagctctgactgaaaatcccggcgttgggatctttattgggctcttgggtcagttttcctttgggaggtggcttctcttaaagtttcccttatttttcagtgttggatggttcaggaagcagggtccctccgatgaggaggtgagaagtgcatcttttaagatgcggtttgttggacggggtttcagcgacaggggtcttgcatctcagggaacacaaaacctgatatggaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005886 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sacchrp_dh_NADP

Protein Analysis

336

Amino Acids

36.8

Weight (kDa)

9.26

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39410
fragaria_vesca	FvH4_6g47610 FvH4_6g47650 FvH4_6g47650 FvH4_6g47700
malus_domestica	MD09G1060600.v1.1
prunus_persica	Prupe.3G260300_v2.0.a1
pyrus_communis	pycom111g05100
rosa_chinensis	RchiOBHm_Chr2g0166731 RchiOBHm_Chr2g0166761 RchiOBHm_Chr2g0166771 RchiOBHm_Chr4g0415091
rosa_laevigata	RLG00000021643 RLG00000021646 RLG00000021664 RLG00000021667
rosa_multiflora	Rmu_co8040738.1_g000001 Rmu_sc0000949.1_g000002 Rmu_sc0000949.1_g000005 Rmu_sc0002181.1_g000013 Rmu_sc0002181.1_g000015 Rmu_sc0002181.1_g000024 Rmu_sc0004406.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084230 Rroxscaffold_2G00084260 Rroxscaffold_2G00084280 Rroxscaffold_2G00084550 Rroxscaffold_2G00084590 Rroxscaffold_2G00084600
rosa_rugosa	Rorug02G0525000 Rorug02G0525200
rosa_samantha	Rh2AG591500 Rh2BG603200 Rh2BG603500 Rh2CG356500 Rh2CG574100 Rh2CG574500 Rh2DG614200 Rh2DG614300 Rh4BG125500
rosa_wichuraiana	Rw2G049260 Rw2G049280 Rw2G049300 Rw4G016320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	314, 583
AccB1I	GGYRCC	2 cut(s)	44, 511
AccII	CGCG	1 cut(s)	323
AccIII	TCCGGA	1 cut(s)	359
AclWI	GGATC	3 cut(s)	224, 621, 812
AcoI	YGGCCR	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	726
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	762
AfiI	CCNNNNNNNGG	6 cut(s)	171, 172, 686, 800, 801, 840
AgsI	TTSAA	2 cut(s)	484, 701
AjnI	CCWGG	2 cut(s)	638, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	5 cut(s)	154, 540, 628, 736, 779
AluI	AGCT	5 cut(s)	154, 540, 628, 736, 779
Alw21I	GWGCWC	2 cut(s)	630, 781
Alw26I	GTCTC	2 cut(s)	126, 326
AlwI	GGATC	3 cut(s)	224, 621, 812
Ama87I	CYCGRG	1 cut(s)	487
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	7 cut(s)	136, 174, 286, 390, 641, 656, 718
ApaI	GGGCCC	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	7 cut(s)	174, 286, 287, 636, 671, 689, 899
AsuC2I	CCSGG	1 cut(s)	795
AsuHPI	GGTGA	3 cut(s)	49, 102, 928
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	4 cut(s)	636, 671, 689, 899
BaeGI	GKGCMC	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	44, 511
BanII	GRGCYC	5 cut(s)	290, 425, 630, 781, 819
Bbv12I	GWGCWC	2 cut(s)	630, 781
BccI	CCATC	4 cut(s)	215, 379, 616, 876
BceAI	ACGGC	2 cut(s)	319, 426
BciT130I	CCWGG	2 cut(s)	640, 669
BcnI	CCSGG	1 cut(s)	795
BcoDI	GTCTC	2 cut(s)	126, 326
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	48
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	4 cut(s)	139, 247, 321, 507
BlsI	GCNGC	4 cut(s)	140, 248, 322, 508
Bme1390I	CCNGG	3 cut(s)	640, 669, 795
Bme18I	GGWCC	4 cut(s)	636, 671, 689, 899
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	7 cut(s)	174, 286, 287, 636, 671, 689, 899
BmiI	GGNNCC	6 cut(s)	46, 288, 289, 513, 900, 901
BmrFI	CCNGG	3 cut(s)	640, 669, 795
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	4 cut(s)	739, 927, 935, 986
BmuI	ACTGGG	1 cut(s)	181
BoxI	GACNNNNGTC	1 cut(s)	969
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
Bpu10I	CCTNAGC	1 cut(s)	130
BpuEI	CTTGAG	2 cut(s)	71, 101
BpuMI	CCSGG	1 cut(s)	795
BsaHI	GRCGYC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	40, 653
BsaWI	WCCGGW	2 cut(s)	59, 359
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 172, 686, 800, 801, 840
Bse118I	RCCGGY	2 cut(s)	134, 335
Bse1I	ACTGG	2 cut(s)	176, 393
BseAI	TCCGGA	1 cut(s)	359
BseBI	CCWGG	2 cut(s)	640, 669
BseDI	CCNNGG	2 cut(s)	40, 653
BseGI	GGATG	5 cut(s)	36, 207, 270, 390, 887
BseLI	CCNNNNNNNGG	6 cut(s)	171, 172, 686, 800, 801, 840
BseMII	CTCAG	2 cut(s)	527, 995
BseNI	ACTGG	2 cut(s)	176, 393
BseRI	GAGGAG	3 cut(s)	97, 666, 926
BseSI	GKGCMC	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	7 cut(s)	138, 176, 288, 392, 643, 658, 720
BshNI	GGYRCC	2 cut(s)	44, 511
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	2 cut(s)	630, 781
BsiHKCI	CYCGRG	1 cut(s)	487
BslFI	GGGAC	3 cut(s)	223, 589, 885
BslI	CCNNNNNNNGG	6 cut(s)	171, 172, 686, 800, 801, 840
BsmAI	GTCTC	2 cut(s)	126, 326
BsmFI	GGGAC	3 cut(s)	223, 589, 885
BsnI	GGCC	7 cut(s)	138, 176, 288, 392, 643, 658, 720
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	487
Bsp120I	GGGCCC	1 cut(s)	286
Bsp1286I	GDGCHC	5 cut(s)	290, 425, 630, 781, 819
Bsp13I	TCCGGA	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	28, 229, 613, 804
BspANI	GGCC	7 cut(s)	138, 176, 288, 392, 643, 658, 720
BspCNI	CTCAG	2 cut(s)	528, 994
BspEI	TCCGGA	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	6 cut(s)	46, 288, 289, 513, 900, 901
BspPI	GGATC	3 cut(s)	224, 621, 812
BspQI	GCTCTTC	1 cut(s)	161
BspT107I	GGYRCC	2 cut(s)	44, 511
BspTNI	GGTCTC	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	134, 335
BsrI	ACTGG	2 cut(s)	176, 393
BssAI	RCCGGY	2 cut(s)	134, 335
BssECI	CCNNGG	2 cut(s)	40, 653
BssMI	GATC	4 cut(s)	28, 229, 613, 804
BssNI	GRCGYC	1 cut(s)	45
Bst2UI	CCWGG	2 cut(s)	640, 669
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	136, 325
BstDEI	CTNAG	3 cut(s)	130, 536, 981
BstENI	CCTNNNNNAGG	2 cut(s)	684, 838
BstF5I	GGATG	5 cut(s)	36, 207, 270, 390, 887
BstFNI	CGCG	1 cut(s)	323
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	4 cut(s)	31, 232, 616, 807
BstMAI	GTCTC	2 cut(s)	126, 326
BstMBI	GATC	4 cut(s)	28, 229, 613, 804
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 252, 294, 303, 640
BstNI	CCWGG	2 cut(s)	640, 669
BstPAI	GACNNNNGTC	1 cut(s)	969
BstSCI	CCNGG	3 cut(s)	638, 667, 793
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	7 cut(s)	138, 176, 288, 392, 643, 658, 720
BtsCI	GGATG	5 cut(s)	36, 207, 270, 390, 887
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	500, 880
Cac8I	GCNNGC	2 cut(s)	136, 325
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	2 cut(s)	134, 335
Cfr13I	GGNCC	7 cut(s)	174, 286, 287, 636, 671, 689, 899
Csp6I	GTAC	1 cut(s)	761
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	761
DdeI	CTNAG	3 cut(s)	130, 536, 981
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	4 cut(s)	30, 231, 615, 806
DpnII	GATC	4 cut(s)	28, 229, 613, 804
DrdI	GACNNNNNNGTC	2 cut(s)	314, 583
DseDI	GACNNNNNNGTC	2 cut(s)	314, 583
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	4 cut(s)	233, 284, 428, 479
Ecl136II	GAGCTC	2 cut(s)	628, 779
EclXI	CGGCCG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	643
Eco24I	GRGCYC	5 cut(s)	290, 425, 630, 781, 819
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	4 cut(s)	636, 671, 689, 899
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	2 cut(s)	628, 779
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	487
EcoICRI	GAGCTC	2 cut(s)	628, 779
EcoNI	CCTNNNNNAGG	2 cut(s)	684, 838
EcoO109I	RGGNCCY	2 cut(s)	287, 899
EcoRII	CCWGG	2 cut(s)	638, 667
EcoT38I	GRGCYC	5 cut(s)	290, 425, 630, 781, 819
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	1 cut(s)	379
FaiI	YATR	3 cut(s)	356, 377, 1003
FalI	AAGNNNNNCTT	4 cut(s)	848, 880, 913, 945
FaqI	GGGAC	3 cut(s)	223, 589, 885
FatI	CATG	1 cut(s)	375
FauI	CCCGC	2 cut(s)	223, 272
Fnu4HI	GCNGC	4 cut(s)	139, 247, 321, 507
FokI	GGATG	5 cut(s)	23, 194, 257, 397, 894
FriOI	GRGCYC	5 cut(s)	290, 425, 630, 781, 819
Fsp4HI	GCNGC	4 cut(s)	139, 247, 321, 507
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	4 cut(s)	139, 247, 321, 507
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	7 cut(s)	138, 176, 288, 392, 643, 658, 720
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	4 cut(s)	452, 545, 584, 664
HphI	GGTGA	3 cut(s)	49, 102, 928
Hpy188I	TCNGA	5 cut(s)	7, 537, 550, 783, 907
Hpy188III	TCNNGA	5 cut(s)	73, 350, 360, 574, 889
Hpy99I	CGWCG	3 cut(s)	74, 317, 320
HpyAV	CCTTC	4 cut(s)	301, 412, 690, 750
HpyCH4IV	ACGT	2 cut(s)	69, 578
HpyCH4V	TGCA	2 cut(s)	926, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 252, 294, 303, 640
HpyF3I	CTNAG	3 cut(s)	130, 536, 981
HpySE526I	ACGT	2 cut(s)	69, 578
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
KflI	GGGWCCC	1 cut(s)	899
Kpn2I	TCCGGA	1 cut(s)	359
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	28, 229, 613, 804
LguI	GCTCTTC	1 cut(s)	161
LmnI	GCTCC	4 cut(s)	260, 625, 633, 776
LweI	GCATC	4 cut(s)	739, 927, 935, 986
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	69, 578
MalI	GATC	4 cut(s)	30, 231, 615, 806
MboI	GATC	4 cut(s)	28, 229, 613, 804
MboII	GAAGA	2 cut(s)	148, 777
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	5 cut(s)	290, 425, 630, 781, 819
MluCI	AATT	1 cut(s)	558
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	3 cut(s)	446, 554, 593
MmeI	TCCRAC	2 cut(s)	859, 928
MroI	TCCGGA	1 cut(s)	359
MroNI	GCCGGC	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	2 cut(s)	854, 933
MspR9I	CCNGG	3 cut(s)	640, 669, 795
MvaI	CCWGG	2 cut(s)	640, 669
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	5 cut(s)	51, 252, 294, 303, 640
NaeI	GCCGGC	1 cut(s)	136
NarI	GGCGCC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	795
NdeII	GATC	4 cut(s)	28, 229, 613, 804
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	6 cut(s)	46, 288, 289, 513, 900, 901
NmeAIII	GCCGAG	1 cut(s)	21
PaeR7I	CTCGAG	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	2 cut(s)	309, 324
PdiI	GCCGGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	664
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	140, 248, 322, 508
PleI	GAGTC	3 cut(s)	446, 553, 592
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	446, 553, 592
PpuMI	RGGWCCY	1 cut(s)	899
PshAI	GACNNNNGTC	1 cut(s)	969
Psp124BI	GAGCTC	2 cut(s)	630, 781
Psp5II	RGGWCCY	1 cut(s)	899
Psp6I	CCWGG	2 cut(s)	638, 667
PspGI	CCWGG	2 cut(s)	638, 667
PspN4I	GGNNCC	6 cut(s)	46, 288, 289, 513, 900, 901
PspOMI	GGGCCC	1 cut(s)	286
PspPI	GGNCC	7 cut(s)	174, 286, 287, 636, 671, 689, 899
PspPPI	RGGWCCY	1 cut(s)	899
PspXI	VCTCGAGB	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	804
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	762
RsaNI	GTAC	1 cut(s)	761
SacI	GAGCTC	2 cut(s)	630, 781
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	854, 933
SatI	GCNGC	4 cut(s)	139, 247, 321, 507
Sau3AI	GATC	4 cut(s)	28, 229, 613, 804
Sau96I	GGNCC	7 cut(s)	174, 286, 287, 636, 671, 689, 899
SchI	GAGTC	3 cut(s)	446, 554, 593
ScrFI	CCNGG	3 cut(s)	640, 669, 795
SduI	GDGCHC	5 cut(s)	290, 425, 630, 781, 819
SfaNI	GCATC	4 cut(s)	739, 927, 935, 986
SfoI	GGCGCC	1 cut(s)	46
Sfr274I	CTCGAG	1 cut(s)	487
SinI	GGWCC	4 cut(s)	636, 671, 689, 899
SlaI	CTCGAG	1 cut(s)	487
SmlI	CTYRAG	3 cut(s)	86, 116, 487
SmoI	CTYRAG	3 cut(s)	86, 116, 487
Sse9I	AATT	1 cut(s)	558
SseBI	AGGCCT	1 cut(s)	643
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	125
SstI	GAGCTC	2 cut(s)	630, 781
StuI	AGGCCT	1 cut(s)	643
StyD4I	CCNGG	3 cut(s)	638, 667, 793
TaiI	ACGT	2 cut(s)	72, 581
TaqI	TCGA	3 cut(s)	351, 402, 488
TasI	AATT	1 cut(s)	558
TauI	GCSGC	4 cut(s)	141, 249, 323, 509
TfiI	GAWTC	1 cut(s)	664
Tru1I	TTAA	2 cut(s)	854, 933
Tru9I	TTAA	2 cut(s)	854, 933
TscAI	CASTG	2 cut(s)	500, 880
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	2 cut(s)	500, 880
Tth111I	GACNNNGTC	1 cut(s)	311
VpaK11BI	GGWCC	4 cut(s)	636, 671, 689, 899
XagI	CCTNNNNNAGG	2 cut(s)	684, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	713
XhoI	CTCGAG	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.