RchiOBHm_Chr4g0428301

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009740
Physical Location & Seq
Forward (+)
53360144 .. 53361043
900 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39721

Sequence Viewer

Length: 360 bp
ATGGCATATGGATCGGGTCCTTGGTTCGCCCAGCTCTTGGGATTGCAGCGTCGCTATTATTTCTGGTCTCGATCAGTTGAATTCGAAATTGGATTTGTCATCGCCGTTGACAACTACAGTGGAGTAGAGGTCAAATTTCGGCGGGATTTTTCAGTGGATGGTGTCGATCGAATCCTTTTCAGTACATGCAGAGCCGCCGAACACCAAGCTCTGGATCCGATGGCAGTCCACGGCTTCAAAGAGTTCTCAGATCGGTCCGAGGAGGCGTTCGGCCAGGTGAGGTGGGTTCAGACGGAGAGGTCCTGCGACGGGATCATGACCGTCCATTTTGACGATCTCAGGCATGCAGAGAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

119

Amino Acids

13.81

Weight (kDa)

5.51

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB7I CCANNNNNTGG 2 cut(s) 37, 211
AciI CCGC 2 cut(s) 142, 195
AclWI GGATC 4 cut(s) 19, 209, 222, 320
AcoI YGGCCR 1 cut(s) 271
AcsI RAATTY 2 cut(s) 80, 134
AfaI GTAC 1 cut(s) 184
AfiI CCNNNNNNNGG 3 cut(s) 37, 211, 309
AgsI TTSAA 2 cut(s) 80, 238
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AluBI AGCT 2 cut(s) 34, 209
AluI AGCT 2 cut(s) 34, 209
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 4 cut(s) 19, 209, 222, 320
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 2 cut(s) 80, 134
AspS9I GGNCC 3 cut(s) 17, 255, 300
AsuHPI GGTGA 1 cut(s) 289
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 3 cut(s) 17, 255, 300
BamHI GGATCC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 152, 214
BceAI ACGGC 2 cut(s) 89, 247
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 47, 195
BlsI GCNGC 2 cut(s) 48, 196
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 3 cut(s) 17, 255, 300
BmgT120I GGNCC 3 cut(s) 17, 255, 300
BmiI GGNNCC 2 cut(s) 18, 216
BmrFI CCNGG 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 20, 229, 258
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 211, 309
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 3 cut(s) 20, 229, 258
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 3 cut(s) 37, 211, 309
BseMII CTCAG 2 cut(s) 261, 352
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 169
BslI CCNNNNNNNGG 3 cut(s) 37, 211, 309
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 72
Bsp119I TTCGAA 1 cut(s) 84
Bsp143I GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
BspACI CCGC 2 cut(s) 142, 195
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 2 cut(s) 260, 351
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 18, 216
BspPI GGATC 4 cut(s) 19, 209, 222, 320
BspT104I TTCGAA 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 20, 229, 258
BssMI GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 119, 322
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 247, 338
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 7 cut(s) 14, 74, 169, 217, 253, 315, 337
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
BstMCI CGRYCG 1 cut(s) 169
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 189, 347
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 2 cut(s) 124, 159
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 315
Cfr13I GGNCC 3 cut(s) 17, 255, 300
CpoI CGGWCCG 1 cut(s) 255
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 183
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CspI CGGWCCG 1 cut(s) 255
CviAII CATG 3 cut(s) 186, 316, 344
CviJI RGCY 5 cut(s) 34, 194, 209, 234, 273
CviKI_1 RGCY 5 cut(s) 34, 194, 209, 234, 273
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 2 cut(s) 247, 338
DpnI GATC 7 cut(s) 13, 73, 168, 216, 252, 314, 336
DpnII GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 3 cut(s) 17, 255, 300
EcoO109I RGGNCCY 2 cut(s) 17, 300
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 189, 319, 347
FaiI YATR 5 cut(s) 7, 9, 187, 317, 345
FatI CATG 3 cut(s) 185, 315, 343
FauI CCCGC 1 cut(s) 135
FauNDI CATATG 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 47, 195
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 47, 195
GluI GCNGC 2 cut(s) 47, 195
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 273
HgaI GACGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 189, 319, 347
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 171
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 109, 229
Hpy188I TCNGA 4 cut(s) 219, 250, 259, 291
Hpy188III TCNNGA 3 cut(s) 69, 212, 316
Hpy8I GTNNAC 2 cut(s) 109, 229
Hpy99I CGWCG 2 cut(s) 54, 311
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 2 cut(s) 119, 322
HpyCH4V TGCA 3 cut(s) 46, 189, 347
HpyF3I CTNAG 2 cut(s) 247, 338
Hsp92II CATG 3 cut(s) 189, 319, 347
Kzo9I GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
LpnPI CCDG 7 cut(s) 44, 49, 197, 260, 287, 316, 325
Lsp1109I GCAGC 1 cut(s) 58
MalI GATC 7 cut(s) 13, 73, 168, 216, 252, 314, 336
MboI GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
MflI RGATCY 1 cut(s) 214
MluCI AATT 3 cut(s) 80, 87, 134
MnlI CCTC 5 cut(s) 121, 253, 256, 273, 291
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
NdeI CATATG 1 cut(s) 7
NdeII GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
NlaIII CATG 3 cut(s) 189, 319, 347
NlaIV GGNNCC 2 cut(s) 18, 216
NspI RCATGY 2 cut(s) 189, 347
NspV TTCGAA 1 cut(s) 84
PaeI GCATGC 1 cut(s) 347
PagI TCATGA 1 cut(s) 315
PfeI GAWTC 1 cut(s) 171
PflMI CCANNNNNTGG 2 cut(s) 37, 211
PkrI GCNGC 2 cut(s) 48, 196
Ple19I CGATCG 1 cut(s) 169
PpuMI RGGWCCY 2 cut(s) 17, 300
Psp5II RGGWCCY 2 cut(s) 17, 300
Psp6I CCWGG 1 cut(s) 273
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 18, 216
PspPI GGNCC 3 cut(s) 17, 255, 300
PspPPI RGGWCCY 2 cut(s) 17, 300
PsuI RGATCY 1 cut(s) 214
PvuI CGATCG 1 cut(s) 169
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
Rsr2I CGGWCCG 1 cut(s) 255
RsrII CGGWCCG 1 cut(s) 255
SatI GCNGC 2 cut(s) 47, 195
Sau3AI GATC 7 cut(s) 11, 71, 166, 214, 250, 312, 334
Sau96I GGNCC 3 cut(s) 17, 255, 300
ScrFI CCNGG 1 cut(s) 275
SetI ASST 7 cut(s) 36, 132, 211, 279, 284, 302, 357
SfcI CTRYAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 3 cut(s) 17, 255, 300
SphI GCATGC 1 cut(s) 347
Sse9I AATT 3 cut(s) 80, 87, 134
SsiI CCGC 2 cut(s) 142, 195
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 119, 322
TaqI TCGA 4 cut(s) 70, 84, 165, 169
TaqII GACCGA 1 cut(s) 243
TasI AATT 3 cut(s) 80, 87, 134
TatI WGTACW 1 cut(s) 182
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 171
TscAI CASTG 2 cut(s) 124, 159
TseI GCWGC 1 cut(s) 46
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 2 cut(s) 124, 159
Van91I CCANNNNNTGG 2 cut(s) 37, 211
VpaK11BI GGWCC 3 cut(s) 17, 255, 300
XapI RAATTY 2 cut(s) 80, 134
XceI RCATGY 2 cut(s) 189, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.