Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001524.1

Orthogroup ID

OG0009740

Physical Location & Seq

Genomic Coordinates Reverse (-)

209210 .. 209891

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001524.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggacaaagcactcagattggagtacatgtcgatcaaagatgcaagagagttatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaaaaatctgcgcttcgctgacttcaagtctattgctgaatataattcagaagctcttcgcctacaattcatgttgagattttatggacaacctgtcatagagcaagagctaattgagaaaactatttccaccttccccgtttcagcaattgtggtatcaaagcaatatcgtaccgaggtcaatgctggatggatcacgagaactaagagcgttcatgaggcgaattataatgcacccaaaggagggcgcaaggagcagaaccctaagaagggacatgagggacgtatgggtccatataaccaccctaacaaggaagaaaatcgcaagtttggtgcggatatacgtggtggcaatgccacatgtgggaaaggtggtcgtggtatccctggccatagtggtggcaccaaccctcctagggaacgcccgcaacgttcacaacgtgcacctcaattgaagggaggcaaccacaatgatgtgtgtcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

202

Amino Acids

22.89

Weight (kDa)

9.69

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009740)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0428301
rosa_laevigata	RLG00000003070 RLG00000007693 RLG00000026855
rosa_multiflora	Rmu_sc0000745.1_g000003 Rmu_sc0001524.1_g000052 Rmu_sc0002841.1_g000002 Rmu_sc0003153.1_g000010 Rmu_sc0003413.1_g000025 Rmu_sc0012746.1_g000019 Rmu_sc0020260.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186450
rosa_samantha	Rh1CG087900 Rh2AG101200 Rh2AG120600 Rh3AG298400 Rh3BG370900 Rh5AG245100 Rh5DG552400 Rh6CG347700 Rh7CG179600 Rh7CG189200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AasI	GACNNNNNNGTC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	2 cut(s)	458, 548
AclI	AACGTT	1 cut(s)	553
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	563
AfaI	GTAC	2 cut(s)	26, 295
AfeI	AGCGCT	2 cut(s)	63, 74
AfiI	CCNNNNNNNGG	7 cut(s)	365, 366, 391, 392, 433, 486, 538
AflIII	ACRYGT	2 cut(s)	27, 482
AgsI	TTSAA	4 cut(s)	112, 119, 148, 577
AhdI	GACNNNNNGTC	2 cut(s)	148, 215
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	2 cut(s)	176, 232
AluI	AGCT	2 cut(s)	176, 232
Alw21I	GWGCWC	1 cut(s)	568
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	1 cut(s)	323
Aor51HI	AGCGCT	2 cut(s)	63, 74
AoxI	GGCC	1 cut(s)	511
ApaLI	GTGCAC	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	177
AspA2I	CCTAGG	1 cut(s)	536
AspLEI	GCGC	4 cut(s)	64, 75, 135, 372
AspS9I	GGNCC	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	513
BanI	GGYRCC	1 cut(s)	524
BauI	CACGAG	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	568
BccI	CCATC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	515
BfaI	CTAG	2 cut(s)	65, 537
BfoI	RGCGCY	2 cut(s)	65, 76
BfuI	GTATCC	1 cut(s)	515
BlnI	CCTAGG	1 cut(s)	536
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	413
BmeRI	GACNNNNNGTC	2 cut(s)	148, 215
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	414, 526
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	297, 508, 536
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 517, 547
Bsc4I	CCNNNNNNNGG	7 cut(s)	365, 366, 391, 392, 433, 486, 538
Bse3DI	GCAATG	2 cut(s)	88, 481
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	3 cut(s)	297, 508, 536
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	7 cut(s)	365, 366, 391, 392, 433, 486, 538
BseMI	GCAATG	2 cut(s)	88, 481
BseMII	CTCAG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	568
BshFI	GGCC	1 cut(s)	513
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	1 cut(s)	568
BslFI	GGGAC	2 cut(s)	408, 417
BslI	CCNNNNNNNGG	7 cut(s)	365, 366, 391, 392, 433, 486, 538
BsmFI	GGGAC	2 cut(s)	408, 417
BsnI	GGCC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	33, 315
BspACI	CCGC	2 cut(s)	458, 548
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	414, 526
BspPI	GGATC	1 cut(s)	323
BspQI	GCTCTTC	2 cut(s)	63, 183
BspT107I	GGYRCC	1 cut(s)	524
BsrDI	GCAATG	2 cut(s)	88, 481
BssECI	CCNNGG	3 cut(s)	297, 508, 536
BssMI	GATC	2 cut(s)	33, 315
BssSI	CACGAG	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	510
Bst6I	CTCTTC	2 cut(s)	63, 183
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	3 cut(s)	14, 327, 387
BstF5I	GGATG	1 cut(s)	317
BstH2I	RGCGCY	2 cut(s)	65, 76
BstHHI	GCGC	4 cut(s)	64, 75, 135, 372
BstKTI	GATC	2 cut(s)	36, 318
BstMBI	GATC	2 cut(s)	33, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 376
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	31, 486
BstSCI	CCNGG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	568
BstXI	CCANNNNNNTGG	1 cut(s)	521
BsuI	GTATCC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	4 cut(s)	64, 75, 135, 372
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	25, 294
CviAII	CATG	5 cut(s)	28, 193, 338, 398, 483
CviJI	RGCY	3 cut(s)	176, 232, 513
CviKI_1	RGCY	3 cut(s)	176, 232, 513
CviQI	GTAC	2 cut(s)	25, 294
DdeI	CTNAG	3 cut(s)	14, 327, 387
DpnI	GATC	2 cut(s)	35, 317
DpnII	GATC	2 cut(s)	33, 315
DraIII	CACNNNGTG	1 cut(s)	563
DrdI	GACNNNNNNGTC	1 cut(s)	411
DriI	GACNNNNNGTC	2 cut(s)	148, 215
DseDI	GACNNNNNNGTC	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	63, 183
Eam1105I	GACNNNNNGTC	2 cut(s)	148, 215
EarI	CTCTTC	2 cut(s)	63, 183
Eco130I	CCWWGG	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	413
Eco47III	AGCGCT	2 cut(s)	63, 74
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	5 cut(s)	31, 196, 341, 401, 486
FaqI	GGGAC	2 cut(s)	408, 417
FatI	CATG	5 cut(s)	27, 192, 337, 397, 482
FauI	CCCGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	324
FspBI	CTAG	2 cut(s)	65, 537
GlaI	GCGC	4 cut(s)	63, 74, 134, 371
HaeII	RGCGCY	2 cut(s)	65, 76
HaeIII	GGCC	1 cut(s)	513
HhaI	GCGC	4 cut(s)	64, 75, 135, 372
Hin1II	CATG	5 cut(s)	31, 196, 341, 401, 486
Hin6I	GCGC	4 cut(s)	62, 73, 133, 370
HinP1I	GCGC	4 cut(s)	62, 73, 133, 370
HinfI	GANTC	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	557, 566
Hpy188I	TCNGA	2 cut(s)	17, 172
Hpy188III	TCNNGA	2 cut(s)	319, 338
Hpy8I	GTNNAC	2 cut(s)	557, 566
HpyAV	CCTTC	4 cut(s)	106, 265, 385, 571
HpyCH4IV	ACGT	4 cut(s)	406, 466, 553, 562
HpyCH4V	TGCA	3 cut(s)	44, 356, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 376
HpyF3I	CTNAG	3 cut(s)	14, 327, 387
HpySE526I	ACGT	4 cut(s)	406, 466, 553, 562
Hsp92II	CATG	5 cut(s)	31, 196, 341, 401, 486
HspAI	GCGC	4 cut(s)	62, 73, 133, 370
Kzo9I	GATC	2 cut(s)	33, 315
LguI	GCTCTTC	2 cut(s)	63, 183
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	5 cut(s)	117, 228, 294, 495, 522
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	2 cut(s)	65, 537
MaeII	ACGT	4 cut(s)	406, 466, 553, 562
MalI	GATC	2 cut(s)	35, 317
MboI	GATC	2 cut(s)	33, 315
MboII	GAAGA	3 cut(s)	80, 170, 449
MfeI	CAATTG	2 cut(s)	270, 572
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	513
MluCI	AATT	6 cut(s)	166, 188, 234, 270, 346, 572
MluNI	TGGCCA	1 cut(s)	513
MnlI	CCTC	9 cut(s)	107, 110, 292, 334, 359, 394, 543, 575, 579
Mox20I	TGGCCA	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	513
MslI	CAYNNNNRTG	2 cut(s)	519, 594
Msp20I	TGGCCA	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	2 cut(s)	270, 572
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	70, 376
NdeII	GATC	2 cut(s)	33, 315
NlaIII	CATG	5 cut(s)	31, 196, 341, 401, 486
NlaIV	GGNNCC	2 cut(s)	414, 526
NspI	RCATGY	2 cut(s)	31, 486
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	2 cut(s)	27, 482
PciSI	GCTCTTC	2 cut(s)	63, 183
PcsI	WCGNNNNNNNCGW	2 cut(s)	550, 559
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	467
PscI	ACATGT	2 cut(s)	27, 482
PsiI	TTATAA	1 cut(s)	351
Psp1406I	AACGTT	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	414, 526
PspPI	GGNCC	1 cut(s)	413
RsaI	GTAC	2 cut(s)	26, 295
RsaNI	GTAC	2 cut(s)	25, 294
RseI	CAYNNNNRTG	2 cut(s)	519, 594
SapI	GCTCTTC	2 cut(s)	63, 183
Sau3AI	GATC	2 cut(s)	33, 315
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	519, 594
Sse9I	AATT	6 cut(s)	166, 188, 234, 270, 346, 572
SsiI	CCGC	2 cut(s)	458, 548
SspMI	CTAG	2 cut(s)	65, 537
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	536
TaiI	ACGT	4 cut(s)	409, 469, 556, 565
TaqI	TCGA	1 cut(s)	32
TasI	AATT	6 cut(s)	166, 188, 234, 270, 346, 572
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	181, 326
VneI	GTGCAC	1 cut(s)	564
VpaK11BI	GGWCC	1 cut(s)	413
XceI	RCATGY	2 cut(s)	31, 486
XmaJI	CCTAGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	65, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.