Rh7CG189200

Protein terminal ear1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0009740
Physical Location & Seq
Reverse (-)
16709211 .. 16709618
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG189200.1

Sequence Viewer

Length: 408 bp
ATGACAGCTCTCAAAAATTCTCGAGTGGTAGTAACCTCATTGGAACCGAGAAAGAGTTCAAGATTTTCATGGAGAAATATGGGAAGAAGTATCCAACTAGAAAGGAATACATGCAGAGCTGCCGAGCACCAAGCTTTGGATCAGACGACAGTCCACGACTTCAAAGAGTTCTCGGATCTGTCTGAGGAGGTGTTCGGCCAGGTGAGGAGGGTTCAGACGGAGAGGTTCTGCGATGGGATCGTGACCGTCCATTTTGACGATCTCAGGCATGCAGAGAAGGCCTTGGCGGAGAAGAGGTGGCCAAGGTGTGTTACTGTGTTTAGGTATGGGGTTACTCTTGTATTTGGGAGTGTGAATTTGGAGAGGTGGAGGAATTTTGTGGGGAGGATTGGCTCTAGATTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 RRM_2

Protein Analysis

135

Amino Acids

15.77

Weight (kDa)

10.02

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AciI CCGC 1 cut(s) 287
AclWI GGATC 3 cut(s) 147, 183, 245
AcoI YGGCCR 2 cut(s) 196, 299
AcsI RAATTY 3 cut(s) 16, 355, 373
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 2 cut(s) 60, 163
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 3 cut(s) 8, 119, 134
AluI AGCT 3 cut(s) 8, 119, 134
Alw21I GWGCWC 1 cut(s) 129
AlwI GGATC 3 cut(s) 147, 183, 245
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 3 cut(s) 196, 279, 299
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 3 cut(s) 16, 355, 373
Asp700I GAANNNNTTC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 21
BalI TGGCCA 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 200
BciVI GTATCC 1 cut(s) 101
BfaI CTAG 2 cut(s) 98, 396
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 200
BoxI GACNNNNGTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 282, 302
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 282, 302
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 174, 277
BseRI GAGGAG 2 cut(s) 200, 220
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 3 cut(s) 198, 281, 301
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 136
BsnI GGCC 3 cut(s) 198, 281, 301
BsoBI CYCGRG 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 4 cut(s) 139, 175, 237, 259
BspACI CCGC 1 cut(s) 287
BspANI GGCC 3 cut(s) 198, 281, 301
BspCNI CTCAG 2 cut(s) 175, 276
BspLI GGNNCC 1 cut(s) 45
BspPI GGATC 3 cut(s) 147, 183, 245
BssECI CCNNGG 2 cut(s) 282, 302
BssMI GATC 4 cut(s) 139, 175, 237, 259
BssT1I CCWWGG 2 cut(s) 282, 302
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 151, 247, 316
Bst6I CTCTTC 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 183, 263
BstKTI GATC 4 cut(s) 142, 178, 240, 262
BstMBI GATC 4 cut(s) 139, 175, 237, 259
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 2 cut(s) 114, 272
BstPAI GACNNNNGTC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 3 cut(s) 198, 281, 301
BtgZI GCGATG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 270
CviAII CATG 3 cut(s) 69, 111, 269
CviJI RGCY 7 cut(s) 8, 119, 134, 198, 281, 301, 393
CviKI_1 RGCY 7 cut(s) 8, 119, 134, 198, 281, 301, 393
DdeI CTNAG 2 cut(s) 183, 263
DpnI GATC 4 cut(s) 141, 177, 239, 261
DpnII GATC 4 cut(s) 139, 175, 237, 259
EaeI YGGCCR 2 cut(s) 196, 299
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 282, 302
Eco147I AGGCCT 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 282, 302
ErhI CCWWGG 2 cut(s) 282, 302
FaeI CATG 3 cut(s) 72, 114, 272
FaiI YATR 5 cut(s) 70, 80, 112, 270, 327
FatI CATG 3 cut(s) 68, 110, 268
Fnu4HI GCNGC 1 cut(s) 120
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 98, 396
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 3 cut(s) 198, 281, 301
Hin1II CATG 3 cut(s) 72, 114, 272
HindIII AAGCTT 1 cut(s) 132
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 144, 175, 184, 216
Hpy188III TCNNGA 4 cut(s) 21, 60, 241, 396
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 3 cut(s) 151, 247, 316
HpyCH4V TGCA 2 cut(s) 114, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 183, 263
Hsp92II CATG 3 cut(s) 72, 114, 272
Kzo9I GATC 4 cut(s) 139, 175, 237, 259
LpnPI CCDG 3 cut(s) 185, 212, 250
Lsp1109I GCAGC 1 cut(s) 106
MaeI CTAG 2 cut(s) 98, 396
MaeIII GTNAC 4 cut(s) 31, 241, 310, 331
MalI GATC 4 cut(s) 141, 177, 239, 261
MboI GATC 4 cut(s) 139, 175, 237, 259
MboII GAAGA 2 cut(s) 96, 304
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 129
MlsI TGGCCA 1 cut(s) 301
MluCI AATT 4 cut(s) 16, 355, 373, 403
MluNI TGGCCA 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 118
Mox20I TGGCCA 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 55
MscI TGGCCA 1 cut(s) 301
MseI TTAA 2 cut(s) 401, 406
Msp20I TGGCCA 1 cut(s) 301
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 4 cut(s) 139, 175, 237, 259
NlaIII CATG 3 cut(s) 72, 114, 272
NlaIV GGNNCC 1 cut(s) 45
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 2 cut(s) 114, 272
PaeI GCATGC 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 21
PceI AGGCCT 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 55
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 1 cut(s) 121
PshAI GACNNNNGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 175
SaqAI TTAA 2 cut(s) 401, 406
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 4 cut(s) 139, 175, 237, 259
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
SphI GCATGC 1 cut(s) 272
Sse9I AATT 4 cut(s) 16, 355, 373, 403
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 98, 396
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 282, 302
TaaI ACNGT 3 cut(s) 151, 247, 316
TaqI TCGA 1 cut(s) 22
TasI AATT 4 cut(s) 16, 355, 373, 403
Tru1I TTAA 2 cut(s) 401, 406
Tru9I TTAA 2 cut(s) 401, 406
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 136
XapI RAATTY 3 cut(s) 16, 355, 373
XbaI TCTAGA 1 cut(s) 395
XceI RCATGY 2 cut(s) 114, 272
XhoI CTCGAG 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 2 cut(s) 98, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.