Rmu_sc0003413.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003413.1
OG0009740
Physical Location & Seq
Reverse (-)
115692 .. 121363
5672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003413.1_g000025.1.cds

Sequence Viewer

Length: 1209 bp
atggcatatggatcgggtccttggtccgcccagctcttgggatttcagcgtctctattatttctggtctcgatcggttgaattcgaaattggatttgtcatcgccgttgacaactacagtggagtagaggtcgaatttcggcgggatttttcagtggatggtgtcggttggatccttttcagtacatgcagagccgccgagcaccaagctctggatccgacagcagtcctgaaggaattgtgtcctaaaacaatcattttgatcccttatgcacccgtgtgctgcctactacccctgcagcatagccgcacgcctgctgcccctgcagcacagcaggacgctctttcctgtgcaaatcagcctacttacaaacctcaaaatttcttgatacggacctcagataaaaattcttccttcatcaaagttgttcgtccctgtctcttctatctgacctccgaatttcatccttattggagttgttttgagacctgtacactaatcgaagtgaaagcttttcagaggcaaatctgctccgaatttcaacaaagttgttcaggggcaaatctgccgtttgttgccgcacaaaactcactgctgcatctactgctcactgctgccactagttgctgctaccccaaaacacgcctgctccaacacccacgtgttcaatggaacaatctgcgctttgctgatttcaagtctattgctgaatataattcagaagctcttcgcctacagtccatgttgaggttttgtggacaacctatcacaaagcaagagctaattgagaaaactctctccaccttccccgtttcagctattgtggtatcaaagcaataccgtactgaagtcaatgatggacgaatcacgagaactaagagcgttcatgaggcgaattataatgcacccaaaagaaggcgcaaggagcggaaccctaagaataagggatatgagggacgtatgggtccatttaaccgccctaaccaggaaggaaaacgcaagtttggtacggatacacgtggtggcaatgccacacgtgggagagggggtggtggcaaccctggccgtggtggtggcgccatggcccgtggtggtggcaccaacctaaccctattttttttttccactacaagcttcaaagggcaaagacgtggtcggatcttacacttgagaaacattccgtttgatgtggcaagtacattattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

402

Amino Acids

45.19

Weight (kDa)

9.72

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
AasI GACNNNNNNGTC 1 cut(s) 963
AccB1I GGYRCC 2 cut(s) 1076, 1097
AccB7I CCANNNNNTGG 2 cut(s) 37, 211
AccBSI CCGCTC 1 cut(s) 928
AciI CCGC 7 cut(s) 27, 142, 195, 307, 579, 928, 976
AclWI GGATC 7 cut(s) 19, 166, 179, 209, 222, 256, 1166
AcoI YGGCCR 1 cut(s) 1063
AcsI RAATTY 6 cut(s) 80, 134, 379, 406, 458, 536
AcuI CTGAAG 2 cut(s) 251, 867
AcvI CACGTG 3 cut(s) 662, 1019, 1037
AcyI GRCGYC 1 cut(s) 1077
AdeI CACNNNGTG 1 cut(s) 1022
AfaI GTAC 5 cut(s) 184, 493, 844, 1009, 1198
AfiI CCNNNNNNNGG 7 cut(s) 37, 211, 747, 915, 985, 1038, 1067
AflIII ACRYGT 3 cut(s) 661, 1016, 1034
AgsI TTSAA 5 cut(s) 80, 542, 668, 697, 1138
AhlI ACTAGT 1 cut(s) 620
AjiI CACGTC 1 cut(s) 1151
AjnI CCWGG 2 cut(s) 984, 1060
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AleI CACNNNNGTG 2 cut(s) 277, 660
AluBI AGCT 7 cut(s) 34, 209, 512, 725, 781, 818, 1134
AluI AGCT 7 cut(s) 34, 209, 512, 725, 781, 818, 1134
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 4 cut(s) 56, 72, 443, 479
AlwI GGATC 7 cut(s) 19, 166, 179, 209, 222, 256, 1166
AoxI GGCC 2 cut(s) 1063, 1083
ApeKI GCWGC 7 cut(s) 282, 298, 317, 326, 595, 614, 627
ApoI RAATTY 6 cut(s) 80, 134, 379, 406, 458, 536
ArsI GACNNNNNNTTYG 2 cut(s) 1138, 1170
Asp700I GAANNNNTTC 1 cut(s) 726
AspLEI GCGC 3 cut(s) 684, 921, 1079
AspS9I GGNCC 5 cut(s) 17, 24, 393, 965, 1084
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 4 cut(s) 17, 24, 393, 965
BamHI GGATCC 2 cut(s) 171, 214
BanI GGYRCC 2 cut(s) 1076, 1097
BauI CACGAG 1 cut(s) 868
BbrPI CACGTG 3 cut(s) 662, 1019, 1037
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 7 cut(s) 269, 304, 310, 338, 582, 601, 614
BccI CCATC 2 cut(s) 152, 851
BceAI ACGGC 3 cut(s) 89, 553, 1050
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 986, 1062
BciVI GTATCC 1 cut(s) 1006
BcoDI GTCTC 4 cut(s) 56, 72, 443, 479
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 4 cut(s) 115, 296, 324, 734
BfoI RGCGCY 1 cut(s) 1080
BfuI GTATCC 1 cut(s) 1006
Bme1390I CCNGG 2 cut(s) 986, 1062
Bme18I GGWCC 4 cut(s) 17, 24, 393, 965
BmgBI CACGTC 1 cut(s) 1151
BmgT120I GGNCC 5 cut(s) 17, 24, 393, 965, 1084
BmiI GGNNCC 7 cut(s) 18, 173, 216, 932, 966, 1078, 1099
BmrFI CCNGG 2 cut(s) 986, 1062
BmsI GCATC 1 cut(s) 607
BoxI GACNNNNGTC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 1189
BsaAI YACGTR 3 cut(s) 662, 1019, 1037
BsaHI GRCGYC 1 cut(s) 1077
BsaI GGTCTC 2 cut(s) 72, 479
BsaJI CCNNGG 5 cut(s) 20, 1060, 1066, 1080, 1087
BsaXI ACNNNNNCTCC 6 cut(s) 114, 144, 633, 663, 1033, 1063
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 211, 747, 915, 985, 1038, 1067
Bse3DI GCAATG 1 cut(s) 1033
BseBI CCWGG 2 cut(s) 986, 1062
BseDI CCNNGG 5 cut(s) 20, 1060, 1066, 1080, 1087
BseGI GGATG 2 cut(s) 163, 463
BseLI CCNNNNNNNGG 7 cut(s) 37, 211, 747, 915, 985, 1038, 1067
BseMI GCAATG 1 cut(s) 1033
BseMII CTCAG 1 cut(s) 411
BseXI GCAGC 7 cut(s) 269, 304, 310, 338, 582, 601, 614
BseYI CCCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 2 cut(s) 1065, 1085
BshNI GGYRCC 2 cut(s) 1076, 1097
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 204
BslFI GGGAC 2 cut(s) 417, 969
BslI CCNNNNNNNGG 7 cut(s) 37, 211, 747, 915, 985, 1038, 1067
BsmAI GTCTC 4 cut(s) 56, 72, 443, 479
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 2 cut(s) 417, 969
BsnI GGCC 2 cut(s) 1065, 1085
Bso31I GGTCTC 2 cut(s) 72, 479
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 491
Bsp143I GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
Bsp19I CCATGG 1 cut(s) 1080
BspACI CCGC 7 cut(s) 27, 142, 195, 307, 579, 928, 976
BspANI GGCC 2 cut(s) 1065, 1085
BspCNI CTCAG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 886
BspLI GGNNCC 7 cut(s) 18, 173, 216, 932, 966, 1078, 1099
BspMAI CTGCAG 2 cut(s) 300, 328
BspPI GGATC 7 cut(s) 19, 166, 179, 209, 222, 256, 1166
BspQI GCTCTTC 1 cut(s) 732
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 2 cut(s) 1076, 1097
BspTNI GGTCTC 2 cut(s) 72, 479
BsrBI CCGCTC 1 cut(s) 928
BsrDI GCAATG 1 cut(s) 1033
BsrGI TGTACA 1 cut(s) 491
BssECI CCNNGG 5 cut(s) 20, 1060, 1066, 1080, 1087
BssMI GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
BssNI GRCGYC 1 cut(s) 1077
BssSI CACGAG 1 cut(s) 868
BssT1I CCWWGG 2 cut(s) 20, 1080
Bst2BI CACGAG 1 cut(s) 868
Bst2UI CCWGG 2 cut(s) 986, 1062
Bst4CI ACNGT 3 cut(s) 119, 738, 842
Bst6I CTCTTC 2 cut(s) 446, 732
BstACI GRCGYC 1 cut(s) 1077
BstAPI GCANNNNNTGC 1 cut(s) 604
BstAUI TGTACA 1 cut(s) 491
BstBAI YACGTR 3 cut(s) 662, 1019, 1037
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 311, 315, 647
BstDEI CTNAG 3 cut(s) 397, 876, 936
BstDSI CCRYGG 3 cut(s) 1066, 1080, 1087
BstF5I GGATG 2 cut(s) 163, 463
BstH2I RGCGCY 1 cut(s) 1080
BstHHI GCGC 3 cut(s) 684, 921, 1079
BstKTI GATC 6 cut(s) 14, 74, 174, 217, 264, 1161
BstMAI GTCTC 4 cut(s) 56, 72, 443, 479
BstMBI GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
BstMCI CGRYCG 1 cut(s) 74
BstMWI GCNNNNNNNGC 5 cut(s) 323, 326, 604, 925, 1062
BstNI CCWGG 2 cut(s) 986, 1062
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 984, 1060
BstSFI CTRYAG 4 cut(s) 115, 296, 324, 734
BstV1I GCAGC 7 cut(s) 269, 304, 310, 338, 582, 601, 614
BstX2I RGATCY 3 cut(s) 171, 214, 1158
BstYI RGATCY 3 cut(s) 171, 214, 1158
BsuI GTATCC 1 cut(s) 1006
BsuRI GGCC 2 cut(s) 1065, 1085
BtgI CCRYGG 3 cut(s) 1066, 1080, 1087
BtgZI GCGATG 1 cut(s) 85
BtrI CACGTC 1 cut(s) 1151
BtsCI GGATG 2 cut(s) 163, 463
BtsI GCAGTG 2 cut(s) 590, 609
BtsIMutI CAGTG 4 cut(s) 124, 159, 590, 609
Cac8I GCNNGC 3 cut(s) 311, 315, 647
CciI TCATGA 1 cut(s) 886
CfoI GCGC 3 cut(s) 684, 921, 1079
Cfr13I GGNCC 5 cut(s) 17, 24, 393, 965, 1084
CseI GACGC 2 cut(s) 38, 347
Csp6I GTAC 5 cut(s) 183, 492, 843, 1008, 1197
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 4 cut(s) 186, 742, 887, 1081
CviQI GTAC 5 cut(s) 183, 492, 843, 1008, 1197
DdeI CTNAG 3 cut(s) 397, 876, 936
DinI GGCGCC 1 cut(s) 1078
DpnI GATC 6 cut(s) 13, 73, 173, 216, 263, 1160
DpnII GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
DraIII CACNNNGTG 1 cut(s) 1022
DrdI GACNNNNNNGTC 1 cut(s) 963
DseDI GACNNNNNNGTC 1 cut(s) 963
EaeI YGGCCR 1 cut(s) 1063
Eam1104I CTCTTC 2 cut(s) 446, 732
EarI CTCTTC 2 cut(s) 446, 732
EciI GGCGGA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 20, 1080
Eco31I GGTCTC 2 cut(s) 72, 479
Eco47I GGWCC 4 cut(s) 17, 24, 393, 965
Eco57I CTGAAG 2 cut(s) 251, 867
Eco72I CACGTG 3 cut(s) 662, 1019, 1037
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 984, 1060
EcoT14I CCWWGG 2 cut(s) 20, 1080
EgeI GGCGCC 1 cut(s) 1078
EheI GGCGCC 1 cut(s) 1078
ErhI CCWWGG 2 cut(s) 20, 1080
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 4 cut(s) 189, 745, 890, 1084
FaqI GGGAC 2 cut(s) 417, 969
FatI CATG 4 cut(s) 185, 741, 886, 1080
FauI CCCGC 1 cut(s) 135
FauNDI CATATG 1 cut(s) 7
FokI GGATG 2 cut(s) 170, 450
FspBI CTAG 1 cut(s) 621
GlaI GCGC 3 cut(s) 683, 920, 1078
GsaI CCCAGC 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 1080
HaeIII GGCC 2 cut(s) 1065, 1085
HgaI GACGC 2 cut(s) 38, 347
HhaI GCGC 3 cut(s) 684, 921, 1079
Hin1I GRCGYC 1 cut(s) 1077
Hin1II CATG 4 cut(s) 189, 745, 890, 1084
Hin6I GCGC 3 cut(s) 682, 919, 1077
HinP1I GCGC 3 cut(s) 682, 919, 1077
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 510, 1132
HinfI GANTC 1 cut(s) 864
Hpy166II GTNNAC 3 cut(s) 109, 494, 758
Hpy188I TCNGA 8 cut(s) 219, 400, 450, 457, 519, 535, 721, 1158
Hpy188III TCNNGA 6 cut(s) 69, 212, 229, 385, 868, 887
Hpy8I GTNNAC 3 cut(s) 109, 494, 758
HpyAV CCTTC 5 cut(s) 226, 424, 814, 909, 983
HpyCH4III ACNGT 3 cut(s) 119, 738, 842
HpyCH4IV ACGT 5 cut(s) 661, 958, 1018, 1036, 1150
HpyCH4V TGCA 7 cut(s) 189, 272, 298, 326, 353, 598, 905
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 326, 604, 925, 1062
HpyF3I CTNAG 3 cut(s) 397, 876, 936
HpySE526I ACGT 5 cut(s) 661, 958, 1018, 1036, 1150
Hsp92I GRCGYC 1 cut(s) 1077
Hsp92II CATG 4 cut(s) 189, 745, 890, 1084
HspAI GCGC 3 cut(s) 682, 919, 1077
KasI GGCGCC 1 cut(s) 1076
Kzo9I GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
LguI GCTCTTC 1 cut(s) 732
LmnI GCTCC 3 cut(s) 536, 654, 925
Lsp1109I GCAGC 7 cut(s) 269, 304, 310, 338, 582, 601, 614
LweI GCATC 1 cut(s) 607
MaeI CTAG 1 cut(s) 621
MaeII ACGT 5 cut(s) 661, 958, 1018, 1036, 1150
MalI GATC 6 cut(s) 13, 73, 173, 216, 263, 1160
MbiI CCGCTC 1 cut(s) 928
MboI GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
MboII GAAGA 3 cut(s) 402, 433, 719
MflI RGATCY 3 cut(s) 171, 214, 1158
MhlI GDGCHC 1 cut(s) 204
Mly113I GGCGCC 1 cut(s) 1077
MmeI TCCRAC 4 cut(s) 149, 242, 676, 1136
MnlI CCTC 9 cut(s) 121, 384, 406, 463, 513, 741, 883, 946, 1037
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 1 cut(s) 972
MslI CAYNNNNRTG 2 cut(s) 277, 660
MspR9I CCNGG 2 cut(s) 986, 1062
MvaI CCWGG 2 cut(s) 986, 1062
MwoI GCNNNNNNNGC 5 cut(s) 323, 326, 604, 925, 1062
NarI GGCGCC 1 cut(s) 1077
NcoI CCATGG 1 cut(s) 1080
NdeI CATATG 1 cut(s) 7
NdeII GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
NlaIII CATG 4 cut(s) 189, 745, 890, 1084
NlaIV GGNNCC 7 cut(s) 18, 173, 216, 932, 966, 1078, 1099
NmeAIII GCCGAG 1 cut(s) 223
NspI RCATGY 1 cut(s) 189
NspV TTCGAA 1 cut(s) 84
OliI CACNNNNGTG 2 cut(s) 277, 660
PagI TCATGA 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 1 cut(s) 864
PflFI GACNNNGTC 1 cut(s) 1152
PflMI CCANNNNNTGG 2 cut(s) 37, 211
Ple19I CGATCG 1 cut(s) 74
PluTI GGCGCC 1 cut(s) 1080
PmaCI CACGTG 3 cut(s) 662, 1019, 1037
PmlI CACGTG 3 cut(s) 662, 1019, 1037
Ppu21I YACGTR 3 cut(s) 662, 1019, 1037
PpuMI RGGWCCY 1 cut(s) 17
PshAI GACNNNNGTC 1 cut(s) 224
PsiI TTATAA 1 cut(s) 900
Psp5II RGGWCCY 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 984, 1060
PspCI CACGTG 3 cut(s) 662, 1019, 1037
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 2 cut(s) 984, 1060
PspN4I GGNNCC 7 cut(s) 18, 173, 216, 932, 966, 1078, 1099
PspPI GGNCC 5 cut(s) 17, 24, 393, 965, 1084
PspPPI RGGWCCY 1 cut(s) 17
PstI CTGCAG 2 cut(s) 300, 328
PsuI RGATCY 3 cut(s) 171, 214, 1158
PsyI GACNNNGTC 1 cut(s) 1152
PvuI CGATCG 1 cut(s) 74
RsaI GTAC 5 cut(s) 184, 493, 844, 1009, 1198
RsaNI GTAC 5 cut(s) 183, 492, 843, 1008, 1197
RseI CAYNNNNRTG 2 cut(s) 277, 660
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 1 cut(s) 972
Sau3AI GATC 6 cut(s) 11, 71, 171, 214, 261, 1158
Sau96I GGNCC 5 cut(s) 17, 24, 393, 965, 1084
ScrFI CCNGG 2 cut(s) 986, 1062
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 1 cut(s) 607
SfcI CTRYAG 4 cut(s) 115, 296, 324, 734
SfoI GGCGCC 1 cut(s) 1078
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 4 cut(s) 17, 24, 393, 965
SmiMI CAYNNNNRTG 2 cut(s) 277, 660
SmlI CTYRAG 1 cut(s) 1168
SmoI CTYRAG 1 cut(s) 1168
SpeI ACTAGT 1 cut(s) 620
SsiI CCGC 7 cut(s) 27, 142, 195, 307, 579, 928, 976
SspDI GGCGCC 1 cut(s) 1076
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 2 cut(s) 984, 1060
StyI CCWWGG 2 cut(s) 20, 1080
TaaI ACNGT 3 cut(s) 119, 738, 842
TaiI ACGT 5 cut(s) 664, 961, 1021, 1039, 1153
TaqI TCGA 4 cut(s) 70, 84, 132, 501
TatI WGTACW 3 cut(s) 182, 491, 1196
TauI GCSGC 3 cut(s) 197, 309, 581
TfiI GAWTC 1 cut(s) 864
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TscAI CASTG 4 cut(s) 124, 159, 597, 616
TseI GCWGC 7 cut(s) 282, 298, 317, 326, 595, 614, 627
TspDTI ATGAA 3 cut(s) 406, 452, 875
TspGWI ACGGA 3 cut(s) 406, 1025, 1170
TspRI CASTG 4 cut(s) 124, 159, 597, 616
Tth111I GACNNNGTC 1 cut(s) 1152
Van91I CCANNNNNTGG 2 cut(s) 37, 211
VpaK11BI GGWCC 4 cut(s) 17, 24, 393, 965
XapI RAATTY 6 cut(s) 80, 134, 379, 406, 458, 536
XceI RCATGY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.